Lactococcus garvieae ATCC 49156: LCGT_0391
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Entry
LCGT_0391 CDS
T01618
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lgr
Lactococcus garvieae ATCC 49156
Pathway
lgr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCGT_0391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgr03021
]
LCGT_0391
03400 DNA repair and recombination proteins [BR:
lgr03400
]
LCGT_0391
Enzymes [BR:
lgr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCGT_0391
Transcription machinery [BR:
lgr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCGT_0391
DNA repair and recombination proteins [BR:
lgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCGT_0391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAK57904
LinkDB
All DBs
Position
405341..408988
Genome browser
AA seq
1215 aa
AA seq
DB search
MVDVNKFESMRIGIASPQKIRYWSFGEVKKPETINYRTQKPEREGLFDERIFGPQKDWEC
ACGKLKGVFYKNQVCELCGVQVTTAKSRRERMGHIELAAPTSHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVIDPKETDLEKKQLLTEREYREQLLKNGFGSFVAKMGAEAIQDLL
NDVDIDAEVAELKEELKNVSGQRRVKIIRRLDVLTAFKKSGNKLAWMVLNVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPNIIVQNEKRMLQEAVDTLIDNG
RRGRPITGAGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMSELVKREMAANIRAAKRKVERQDAEVWDVLEDVVKEHPVLLNRAPTLH
RLGIQAFEPVLIDGRAMRLHPLACEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEAKGREGEGMIFSNPEEVEIAMRNGYVHLHTRIGI
ATQSMNKPWTEFQKGKILITTVGKVMFNSIMPEGNEIYPEGMPYLNENTDENITTQTDDR
FFMEPGEDIHKRLAEIDTVLPFKKKHLGNIIAEVFKRYRTTTTSEFLDLLKNLGYHQSTL
AGLTVGIADIPVVPEKAEIIGAAHKRVEQITKQFRRGLITDDERYNAVTDVWRGAKDTLE
KRLIEEQDLTNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPIISNFREGLSV
LEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREVDCGTDRGLLISDIATGK
EMVEPLVERLEGRYTRKTVVHPETGEVIIGDDQLITEDIAKQIVAAGIKEVTIRSVFTCK
TPHGVCKHCYGKNLATGEAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSSDITQG
LPRVQEIFEARNPKGEAIITEVTGTVESIVEDAATRTREITVKGKTDTRSYTVSMADVLM
VEEGEFIHRGHQLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGDKHIEVMV
RQMLRKVRVMDTGDVDILPGGLMDISDFEKINEEALLSGKTPATARPVLMGITKASLETN
SFLSAASFQETTRVLTDAAIHGKEDHLLGLKENVIIGKIIPAGTGMFRYRNLEPLSDLSN
APEVTVSETEIEEVK
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgtaaataaatttgagagcatgcgaattggtatcgcatctccacaaaaaatt
cgttactggtcatttggtgaagtcaaaaaaccagaaaccatcaactatcgtacgcaaaaa
cctgaacgcgaaggtctcttcgatgagcgtatctttggtccacaaaaggactgggaatgt
gcttgtggtaagcttaaaggcgttttctacaaaaaccaagtctgcgaactctgtggtgtt
caagtaacgacagctaaatcacgtcgtgaacgtatgggacacatcgagttggcagcacca
acttcacacatctggtatttcaaagggattccatcacgtatggggcttgcacttgatatg
agcccacgtgctcttgaagaagttatttacttcgcaagttatgtcgttattgatcctaag
gaaacagatcttgaaaagaaacaacttttgacagaacgtgaatatcgtgaacaacttttg
aaaaatggttttggttcatttgttgcgaagatgggtgcagaagctatccaagatttgctt
aacgatgttgatattgatgcagaagttgctgaacttaaagaagaattgaaaaatgttagc
ggacaacgccgtgtgaaaatcattcgtcgtttggatgtattaacagccttcaaaaaatct
ggtaacaaattggcatggatggtacttaatgtgcttccagttattccaccagatcttcgt
ccaatggttcaattggatggtggacgttttgccacatctgatttgaatgacctttatcgt
cgtgtaatcaaccgtaacaaccgtttgaaacgtttgatggagcttaacgccccaaatatt
atcgtccaaaatgaaaaacgtatgttgcaagaagctgtggatacattgattgacaatggt
cgtcgtggtcgtccaatcacaggtgccggtaatcgtccgcttaaatctctcagccacatg
ctgaaaggtaaacaaggtcgtttccgtcaaaacttgttgggtaaacgtgtcgactactca
ggtcgttccgttatcgcggttggtccaacacttaaaatgtaccaatgtggtgtcccacgt
gaaatggctatcgaactcttcaaaccattcgtaatgtccgaattggttaaacgtgaaatg
gctgccaacatccgtgcggctaaacgtaaagtagagcgccaagatgctgaagtttgggat
gttcttgaagatgttgttaaagaacacccagttcttcttaaccgcgcacctacgcttcac
cgtttgggtattcaagctttcgagcccgtacttattgatggacgcgcaatgcgtttgcac
ccattggcttgtgaagcctacaatgccgactttgacggggaccaaatggcgattcacgta
ccattgtcagaagaagcgcaagccgaagcacgtttgcttatgcttgctgcggaacacatc
cttaaccctaaagatggtaaaccagtcgttacaccttctcaagatatggtcttgggtaac
tactacttgacaatggaagcaaaaggacgtgaaggagaaggcatgatcttctctaatcct
gaagaagttgaaattgcaatgcgtaatggatatgttcacttgcatacacgtatcggtatt
gcaacacaatcaatgaataaaccttggactgaattccaaaaaggtaaaatcttgattacg
actgtcggtaaagtaatgttcaactcaatcatgcctgaaggaaatgaaatttatccagaa
ggtatgccttacttgaatgaaaataccgatgagaatatcacaactcaaacggatgaccgt
ttcttcatggaacctggtgaagatatccataaacgtttagctgagattgatacagtattg
ccattcaagaaaaaacatttaggtaatattatcgccgaagtcttcaaacgttaccgtaca
acaacaacttctgaattccttgacttgctcaagaacttaggttaccaccaatcaacattg
gctggtttaacagttggtattgcggatatcccagtggttcctgaaaaagcagaaatcatt
ggtgctgcacacaaacgtgtggaacaaatcactaaacaattccgtcgtggtttgattact
gatgatgagcgctacaatgcggttactgatgtttggcgtggtgcaaaagacacacttgaa
aaacgcttgattgaagaacaagacttgactaacccaatcgttatgatgatggactctggt
gcccgtggtaacatttccaacttctcacaattggccggtatgcgtggtttgatggctgcg
cctaatggacgtatcatggaattgcctatcatttctaacttccgtgaaggtctttctgtc
ttggaaatgttcttctcaactcacggtgcgcgtaaaggtatgaccgatacagcccttaag
actgccgactctggttaccttacacgtcgtttggttgacgtcgctcaagacgttatcatc
cgtgaagtggattgtggtacagaccgtggactcttgatctctgatattgcaacaggtaaa
gaaatggttgaaccgttggttgaacgtcttgaaggacgttacacacgcaaaactgttgta
catccagaaactggtgaagtgatcattggggatgaccaattgatcacagaagatatcgcg
aagcaaattgttgctgcgggtatcaaagaagttacaatccgttcagtctttacatgtaaa
acaccacacggtgtatgtaaacactgttatggtaaaaacttggcaacaggtgaagccgtt
gaagttggtgaagctgttggtacaatcgccgctcaatccatcggtgaacctggtacacag
ttgacaatgcgtacattccacacgggtggtgttgcgtcaagctcagatatcactcaaggt
ttgcctcgtgtacaagaaatctttgaagcacgtaatcctaaaggggaagcaatcattacc
gaagttacgggtacggttgagtctattgtggaagatgctgcgacacgtacacgtgaaatc
acagttaaaggtaaaacagatacacgttcatacacagtatcaatggccgatgtacttatg
gttgaagaaggtgaatttatccaccgtggtcaccaattgatccaaggttcaatcgaacct
aagcacttgctccaagtacgtgatgctttatctgttgaaacttacttgctcggtgaagtt
caaaaaacttaccgttcacaaggggttgaaatcggcgataaacacatcgaggttatggtt
cgccaaatgcttcgtaaagtccgcgtaatggatacaggtgatgtcgatatcttacctggt
ggacttatggatatttctgactttgaaaaaatcaatgaagaagctctcctttcaggtaaa
acaccagcgacagcacgtcctgtacttatgggtattaccaaagcatcattggaaacaaat
tcattcttgtctgctgcatccttccaagaaacaacacgtgtcttgactgatgctgcaatc
cacggtaaagaagaccacttactcggtcttaaggaaaatgtcattatcggtaagattatt
cctgccggtacaggtatgttccgttaccgtaatcttgagccattgtcagatttgtcaaac
gctcctgaagtaactgtttcagaaactgaaattgaagaagttaaataa
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