Lactococcus garvieae ATCC 49156: LCGT_0703
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Entry
LCGT_0703 CDS
T01618
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lgr
Lactococcus garvieae ATCC 49156
Pathway
lgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCGT_0703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgr03019
]
LCGT_0703
03400 DNA repair and recombination proteins [BR:
lgr03400
]
LCGT_0703
Enzymes [BR:
lgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCGT_0703
Messenger RNA biogenesis [BR:
lgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCGT_0703
DNA repair and recombination proteins [BR:
lgr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCGT_0703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
BAK58216
LinkDB
All DBs
Position
727728..729506
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AA seq
592 aa
AA seq
DB search
MNLEAKLKEIFGYESFRQGQKQIIEQVLQGKDTLGILPTGAGKSICYQLPALLQEGVTLV
VSPLISLMKDQVDQLNIANIPATFINSTVDEQETYFRMQQIENGKVKILFVAPERFELES
FNYFLQHLPIDLVAIDEAHCISQWGHDFRPSYVTFAKRLADLPTSPTLLALTATATPRVS
ADIQDLLQISEENTVKTGFLRENLRFEVVKGKDKRDFLKSHLKEHADESGIIYANTRKEV
EEVTEWLNRNNFPAKRYHAGLSELERQKNQEDFLYDEVPIMVATNAFGMGINKSNVRFVI
HYGMPATIEAYYQEAGRAGRDGLDSDAILLFSPNDVRLRNFLIEQGEGSEQHKEQEYEKL
RQMQAYTSSETCLQGYILQYFGDAGEDCHKCSNCLDDRERTDVTLDAQKVMSCIIRMEQR
FGKTAVAQVLVGSKNKNLARWNFEKLSTFGIMKGYSQKAVGELIDFLAGEGYLSVSAGKF
PLLGVSERGIAVLQGREQVWRRAALSINKQQAATSGTFNVELFEELRALRLDIAKSEGVP
PFMIFSDASLKDMTRIMPLDEETFLEVSGVGQVKLKKYGQVFLEALNIYNQG
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagaagcaaaactcaaggaaatatttggctatgaaagtttccgtcaaggacaa
aaacaaataatagagcaagttctacagggaaaagatacgctggggatattgccgacagga
gcagggaaatccatttgctatcaattacctgcccttttacaagaaggcgttacactcgtg
gtctcgcctttaatttctctgatgaaggatcaggtggatcagttaaatattgcaaatata
ccagcaacttttattaattcgacagtcgatgagcaagaaacttatttccgaatgcaacag
attgaaaatggcaaggttaaaatcttgtttgttgcgcctgaacggtttgaattagaatct
tttaactattttttgcagcaccttcctattgacttggttgcaattgatgaagcgcactgt
atctcccaatggggacacgattttaggccttcttatgttacttttgcgaaacgtttggct
gatttgcctacttcgcccacacttttagcactaacagctacagccacacctcgggtatct
gcagatattcaagatttattacaaatctctgaagagaatactgttaaaacaggtttttta
cgcgaaaacctacgctttgaagttgttaaaggaaaagataaacgcgattttttaaagtcc
cacctaaaagaacatgcagacgaatctggcattatctacgccaacacacgtaaggaagta
gaagaagttacggaatggttaaaccgaaataattttcctgctaaacgttatcatgctggt
ctatcagagttagaacgtcaaaaaaatcaggaagattttctttatgatgaagttcccatt
atggtggcaacgaatgcttttggaatgggaatcaataagagcaatgttcgttttgtgatc
cattatgggatgcctgccactattgaagcctactatcaagaggcaggtcgtgcaggacga
gatgggcttgattcggatgctatcttattattttcgcccaacgatgttcggctcagaaac
ttcttgattgagcaaggggaagggagtgagcagcataaggagcaagaatacgaaaagctc
agacagatgcaggcctacaccagttccgaaacctgcctgcaaggctatattttgcagtac
tttggagatgcgggagaggactgtcataaatgctcaaattgtttagatgaccgggagcgt
accgatgttacgcttgatgctcaaaaagttatgtcctgtattattcgaatggagcaacgt
tttggaaaaacagcagtcgcacaagttttagtgggctctaaaaataaaaacttggcgcgg
tggaattttgaaaaactctcaacttttggcataatgaaggggtattcgcaaaaagcagtt
ggagagctgattgactttttagcgggagaaggatacttatctgtctccgcaggcaagttt
cccttactgggggtttcagagcgtgggatagctgttctacaagggagagaacaagtctgg
cgacgtgcggcattaagtattaataagcaacaagctgcaaccagtggtacatttaatgtg
gaactatttgaagaattacgtgcattacgtcttgacattgccaaatcagaaggcgttcct
ccctttatgatattttccgatgcttcattgaaagacatgacaagaattatgcctttagac
gaagagacttttttagaagtttccggtgtaggtcaagtgaagttgaaaaagtatggtcaa
gtgttcctagaggcattaaatatctataatcaaggataa
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