Lactococcus garvieae ATCC 49156: LCGT_1590
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Entry
LCGT_1590 CDS
T01618
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lgr
Lactococcus garvieae ATCC 49156
Pathway
lgr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LCGT_1590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgr03021
]
LCGT_1590
Transcription machinery [BR:
lgr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LCGT_1590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IF2_N
Sigma70_r1_1
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
BAK59103
LinkDB
All DBs
Position
complement(1560830..1562212)
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AA seq
460 aa
AA seq
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MASNNKKRISQIAKETGITNKALIAKAQELGMAVKSHSSSIFEAEEAKLLAAMDFKPIIV
EKVDVEELKEKGSKQVTSVKEKAAKKVDIKDSDTFDNKAFDKAVAAYITKRKPLEEALDD
EITDELVVKFGLEAEAIEDLLQQIQDAGISIVDKDGNPSPLALQAEEEEKLDDNAMDEIV
TNVRIDDPVRMYLKEIGRYPLISLEEETKLAEAIVAGGDEAEFAKQMLAEANLRLVVSIA
KRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIR
IPVHMVETINKLIRVQRNLLQELGRDPLPEEIGKELHMTPDKVREVLKIAQEPVSLETPI
GEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMH
TLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDFM
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
ttggcaagtaataataaaaaaagaatcagtcaaattgcaaaagaaactggaattactaac
aaagctttaatcgcaaaagcacaagagcttggcatggcggttaaatctcattcaagttct
atttttgaagctgaagaagcaaaactccttgcagcaatggattttaaacctattattgtt
gaaaaagttgatgtggaagagctgaaagaaaaaggttctaagcaagtaacttctgttaaa
gaaaaagcggccaagaaagtcgatattaaagattcggatacctttgataacaaggctttt
gataaagcagtagcagcttatattacaaaacgtaaacctctcgaagaagctttagatgat
gaaattacagatgagcttgtggtgaagtttggtttggaagcagaagctatcgaagatttg
cttcaacaaatccaagatgcgggtatttccattgttgacaaagatgggaatcctagtcca
ttagctttgcaagcagaagaagaagaaaagcttgatgataatgcaatggatgaaatcgtg
acaaatgtccgtattgatgatcctgtccgtatgtatcttaaggaaatcggacgttacccg
ttgatttcacttgaagaagaaacaaaacttgcggaagctattgttgcaggcggagatgaa
gcggaatttgccaaacaaatgcttgcggaagccaatttacgtttggttgtttcaattgca
aagcgttattcaggacgcggcatgcaattcttggatttgattcaagaaggaaacatggga
cttatgaaagctgtggacaaatttgaccataccaaaggtttcaaattctcaacttatgcg
acatggtggattcgtcaagcaatcacacgtgcgattgctgaccaagcacgtacaatccgt
atccctgtccacatggttgaaacaatcaataagttaatccgtgtgcaacgtaatctttta
caagagttgggtcgtgatcctttaccagaagaaatcggtaaagaattacacatgacacct
gataaagttcgtgaagtcttaaaaattgcacaagaacctgtatcattggaaacacctatt
ggtgaggaagacgattcacaccttggagatttcattgaagatgatgtgattgaaagtcca
gtagactatacaaaccgtatcttgcttcgtgaacagcttgatgaagttatggataccttg
acagaccgtgaagaaaacgtgttgcgtatgcgctttggcttagatgatggccgcatgcac
acacttgaagatgttggtaaacaatttaaagtgacacgtgaacgtattcgtcaaattgaa
gcaaaagcgattaagaaattacgtcatcctcgtcgcagcaaaccattgcgtgactttatg
taa
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