Leuconostoc gasicomitatum: LEGAS_0493
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Entry
LEGAS_0493 CDS
T01267
Symbol
rnjB
Name
(GenBank) Ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lgs
Leuconostoc gasicomitatum
Pathway
lgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEGAS_0493 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgs03019
]
LEGAS_0493 (rnjB)
Messenger RNA biogenesis [BR:
lgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LEGAS_0493 (rnjB)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CBL91141
LinkDB
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Position
complement(497403..499085)
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AA seq
560 aa
AA seq
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MTYSVDIKPNEVAVYALGGLGEIGKNTYGIEYQNEIIVVDAGIKFPEDDLLGIDYVIPDY
TYLVDNIDRVKALVITHGHEDHIGAISYFLQSVNVPVYAGPLAMALIKNKLEEKQMLNRV
ELHEITDGSVLEFDKLSVEFFRTTHSIPDVFGVAIHTPVGTIVETGDFKFDLTPTTKQPP
NLWSMARIGENGVLLMMSDSTNAERPEWTKSEAWVAKSVNRIFDKIEHGRIIFATFASNM
NRVRMATDAAIAHGRKIAVFGRSMESAVTNGRALGYLNIPDNMLVEQSEIKHIPDDELLI
LSTGSQGEPMAALARIAEGTHKQIRLKPKDNVIFSSSPIPGNTASVNQVINKLEEGGANV
IYGKVNNIHTSGHGGQEEEKLMIALMKPKFFMPVHGEYRMLKVHASLAQELDVPKDHTFI
LENGDVLALDGENARVAGHFPGDDTYIDGSGIGDIGSVVLHDRQKLSQDGLVVVTATIDL
KEKEILSGPDILSRGFVYMRESGDLINEGRRVIFGTMRRVMSNPNVNEADIRQAVIDDLS
RFLYKETARKPMVLPMLIMI
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacatattctgtagatattaaacctaatgaagtcgcagtatatgcgctaggtggatta
ggcgagatcggtaagaacacatacggtattgagtatcaaaatgaaatcattgtcgtcgac
gcgggtattaagttcccggaagatgatttactcggcattgactatgttattcctgactat
acttatttagtcgacaacatcgatcgcgtcaaggcattggttattacgcacggacacgaa
gaccatatcggtgccatctcctactttttacaatcagttaatgttccagtctatgctggt
cctttagccatggctttgatcaagaataaacttgaagaaaagcaaatgttaaatcgtgtt
gagctgcacgaaattacagatggttcagtacttgagtttgataaattaagtgttgaattt
ttccgaacaacgcactcaatacctgatgtgtttggtgttgctatccatacccctgttggt
acaattgttgagaccggtgattttaaatttgatctgacacccacaacaaaacagccacct
aacctctggtcaatggctcgtattggcgaaaatggtgtcttactcatgatgagtgattca
actaacgctgaacgtcctgaatggacaaaatcagaagcttgggtcgccaaatcagtcaat
cgtatttttgataaaattgaacatggccgcattatttttgctacattcgcttctaatatg
aatcgtgttcgtatggcaactgatgctgccattgcacatggtcgtaaaattgctgtcttt
ggtcgttcaatggaatcagctgtaactaacggtcgcgcgctaggttatttgaatatccca
gataatatgcttgttgagcaatcagaaatcaaacatattccagatgatgagttattaatc
ttatccactggttctcaaggtgaaccaatggcagctttagcgcgaattgctgaaggaact
cataaacaaattcgtctaaagcctaaagataacgttattttttcttcctcacctatccct
ggtaatacagcttccgtcaatcaagtaatcaataagttagaagaaggcggcgctaatgtt
atttatggtaaagtcaataacatccacacatctggtcacggtggtcaagaagaagaaaaa
ttgatgattgccttgatgaaaccaaaattcttcatgccggtccacggtgagtatcgtatg
cttaaggttcatgcatcattagcgcaagaacttgatgtgccaaaagatcacacttttatt
ttagaaaatggtgatgttttggctttagatggcgaaaatgcccgtgttgctggtcatttt
cccggtgacgatacctacattgatggatcgggtatcggagatattggttcagttgtatta
catgatcgtcaaaaattgtctcaggacggcttagttgtcgtaactgcaacaattgattta
aaagaaaaagaaattttgtctggtccagatattttatctcgtggattcgtttacatgcgt
gaatctggtgatttgattaatgaaggccgccgtgttatttttggaacaatgcgtcgtgtg
atgagtaatccaaatgttaacgaagcagatattcgtcaagcggttattgatgatctttct
agatttttatataaagagactgcacgtaaacctatggtcttaccaatgttaattatgatt
tga
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