Legionella geestiana: E4T54_05900
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Entry
E4T54_05900 CDS
T06170
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lgt
Legionella geestiana
Pathway
lgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4T54_05900 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgt03019
]
E4T54_05900 (rnr)
03016 Transfer RNA biogenesis [BR:
lgt03016
]
E4T54_05900 (rnr)
Enzymes [BR:
lgt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E4T54_05900 (rnr)
Messenger RNA biogenesis [BR:
lgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4T54_05900 (rnr)
Transfer RNA biogenesis [BR:
lgt03016
]
Prokaryotic type
tRNA degradation factors
E4T54_05900 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QBS12314
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Position
1338987..1341170
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AA seq
727 aa
AA seq
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MSKKKSRDPFFERECEKYDNPIPSREFIRQVLEDYGRPMSRNQLLEALDITEAEKQEALG
FRLKAMLRDAQLMQDRRGRFCLMGKLNLLRGRVQGHPDGFGFFIPEDGSPDMVLSAREMR
HVMHGDLVLAHEIGVDRRGRPEGKIHEVVEHANASVVGRFFTEHGVSIVIPDNKRLTQDI
SIPQEFANGAKNGQVVLAEVIAYPSKRTQAIGKVAHILGDHMAPGMEIDVAIHAHGIPSD
WPQDVLDEAARIPLSVDEASLKGRTDLRKLPFVTIDGEDAKDFDDAVLAHEKPNGGYQLY
VAIADVSHYVQPDSALDKEAARRGNSVYFPGRVVPMLPESLSNGICSLNPHVDRLCMVAE
MHISKDGKITRSRFYRGVIHSKARLTYTKVGTWVQQDAPPPEHREIWPHLKALHSLFTVL
EGMRKSRGAIDFDTTETRIEFDEHKKIRNIVPVIRNDAHRLIEECMLAANVATARFLEKA
EIPALYRVHMPPSEDKVLALRQFLNEVGLSLSGGKKPTPRDFQKTMEKLIDRPDKHLVET
VMLRSLKQAQYLAGNEGHFGLAYSAYTHFTSPIRRYPDLLIHRAIGHLLDNREAENFRYS
TDDMTRLGTHCSSTERRADEATRDVVAWLKCEYMQDKVGQVFHGRISAVTGFGIFVELDE
VYVEGLVHVTSLKNDYYAFDPSKHRLRGERTGVSYNLGDSLTVLVARVDLDERKIDFEPV
EGASQHG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaaaagaaatccagggatcctttctttgaaagggaatgtgaaaaatacgacaac
cccatccccagccgtgaattcatccggcaggttctggaggattacggccgtcccatgtcg
cgcaaccagcttttggaagcgctggacattaccgaggctgaaaagcaggaagcccttggt
tttcgactgaaagccatgctgagagatgcgcagctcatgcaggaccggcgcgggcgcttt
tgcctgatgggcaagctcaatctcctgcgcgggcgcgttcaggggcatcctgatggcttc
ggcttttttattcctgaagacggcagcccggatatggtgctttccgctcgcgaaatgcgc
catgtcatgcacggcgacctggtgctcgctcacgaaatcggcgttgaccgccggggacgt
cccgagggtaaaatccacgaagtggtggagcacgctaatgcctccgttgtcgggcgcttt
ttcacggaacatggcgtcagcattgtcatccctgacaataaacgcctgactcaggacatc
tcgattccgcaggaatttgcaaacggcgcaaaaaacggccaggtggtccttgcggaagtc
atcgcctatccctctaaacgcacacaggcaattggcaaggtggcgcatattcttggcgat
cacatggcacctggaatggaaatcgacgttgccattcatgcgcacggtattccttctgac
tggccgcaggacgtgctcgatgaagccgcccgcattccgctctcggtggatgaagcctct
ctgaaaggccgcaccgatttgcgtaagctgccgtttgtcaccatcgatggcgaagacgcc
aaagactttgatgacgccgttctcgcgcacgaaaaaccaaatggcggctatcagctgtat
gttgccattgccgatgtcagccattacgttcagccagattccgcacttgacaaggaagca
gcacgccgcggcaattcggtctatttcccgggacgcgtggtaccgatgcttccagaatca
ctctcgaacggtatctgttcgctcaatccgcatgtcgacaggctttgcatggtggcggaa
atgcacatcagcaaagacggtaaaatcacccgctcgcgcttttaccgtggcgtgattcat
tctaaagcgcgtctgacctacacaaaggtgggtacatgggtacaacaggatgcgccacct
cctgagcaccgtgagatatggccgcaccttaaggccctgcatagtctttttacggttctc
gagggcatgcgcaaaagccgtggagccattgattttgacaccacggaaacccgtatcgag
tttgacgagcacaaaaaaatacgcaacattgtgccggttatccgcaacgatgcacaccgt
ttaatcgaagagtgcatgctggccgctaacgtcgctaccgcacgttttcttgaaaaagcg
gaaattcccgcactctacagggtgcacatgccgccttcggaagacaaggttctagctctg
cgccagtttttaaacgaagtcggactcagcttaagcggtggcaaaaagccaacgccccgt
gattttcaaaaaaccatggaaaagcttatcgaccgccccgataaacacctggtcgaaacc
gtcatgctgcgctcgctgaagcaggcacaataccttgccggcaatgaggggcattttggg
cttgcctattctgcctatacgcatttcacctcccccatccgccgttaccctgatttattg
attcaccgtgccatcggacatctgctggataaccgcgaagcggaaaactttcgctacagc
acagacgacatgacccgccttggcacgcactgctcgagcaccgagcggcgtgcggatgag
gctacgcgtgatgtggttgcatggcttaagtgtgaatacatgcaggataaagtcggccag
gtgtttcacgggcgcatttcggccgttacaggctttgggattttcgtggaacttgatgag
gtgtatgtcgagggacttgttcatgtcacgtcactcaaaaatgactattacgcctttgac
ccctcaaagcatcgcctgcgtggcgagcgaacgggtgtgagctacaaccttggtgacagc
ctgacggtactggttgccagagtcgaccttgacgagcgcaaaatcgactttgaacccgtg
gaaggagcttctcagcatggctga
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