Legionella geestiana: E4T54_07480
Help
Entry
E4T54_07480 CDS
T06170
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lgt
Legionella geestiana
Pathway
lgt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lgt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E4T54_07480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgt03021
]
E4T54_07480 (rpoC)
03400 DNA repair and recombination proteins [BR:
lgt03400
]
E4T54_07480 (rpoC)
Enzymes [BR:
lgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E4T54_07480 (rpoC)
Transcription machinery [BR:
lgt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E4T54_07480 (rpoC)
DNA repair and recombination proteins [BR:
lgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E4T54_07480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QBS13432
LinkDB
All DBs
Position
1700501..1704733
Genome browser
AA seq
1410 aa
AA seq
DB search
MSDLIGNIKLQGQSEEFDAIKIALASPEMIRTWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKSFECLCGKYKRLKHRGVICEKCGVELADAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTELERGQLLNDEAYLDAIEQYGDEFDARM
GAEAIRDLLRQIDLEGEIRNLREELPTTNSETKIKKITKRLKLLEAFHDSGNKPQWMIMD
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREDPVVWDILDDVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLESQLEA
RSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTRERINAKGEGKVFASTSEAQNFYEAD
LIELHAKVRIRMPVELVGDEDEEGGKSGGQSGYRLVETTVGRAILAGILPKGMPFSTINR
PMTKKVISRVVDACYRRFGLKETVIFADQLMYTGFKYATRAGASIGINDMIIPDDKPAII
AQADNEVREIESQFRSGLVTNGERYNKVIDIWSRTNELVAKSMMSKIATEEVVTREGKTV
RQESFNPIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQYFI
STHGARKGLADTALKTANSGYLTRRLVDVAQDVVITELDCKTEHGIIMQPLIEGGDIVEP
LHERVLGRVVAADVYIPNQDEPVVTAGTLLDEAWVEKLEQLGVDQVKVRSPITCETRFGL
CAYCYGRDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANSIQIQN
KGTIRLHNIKTVTHSKGYLVAVSRSGEVSVVDTFGRERERYDLPYGAVLSVHDQSAAEAG
QIIATWDPHTHPVVSEVAGRLKFVDLVDGITMHRQTDEVTGLSNIVVTDAKQRSSSGKEY
RPLVKLVSDSGEDILLAGTNVAAQYYLPVDAIINFEDNAVVGVGDVIAKIPQERSKTRDI
TGGLPRVADLFEARKPKDSAVMAEKTGVVSYGKETKGKRRLIITSPNGEVHEELIPKWRP
ISVFEGEHVEKGELIAEGPLNPHDILRLLGVGELANYIVNEVQDVYRLQGVKINDKHIEV
IVRQMLRKRVITFAGDSRFLAGEQVEECTMLQENDKLKDADKMQAAGTPILLGITKASLA
TESFISAASFQETTRVLTEAAVSGKVDDLRGLKENVMVGRLIPAGTGYAYHQSRKAKRAR
IAGGEQSHAITASDVEHALSEALNAENREE
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatctgattggaaatatcaaactgcaggggcagagcgaagaatttgatgctatc
aagatagctctcgcatcaccggagatgattcgtacctggtcgtacggagaagtcaaaaag
cccgaaactatcaattaccgcacgttcaagcctgaacgtgacggtcttttctgtgctaaa
atttttggcccggttaagagctttgagtgtctttgtggaaagtacaagcgccttaagcac
cgtggcgttatctgtgagaagtgcggtgttgagcttgctgatgcaaaagtacgccgcgag
cgcatgggacatattgagcttgccagtccggttgctcatatctggttcctgaaatccctt
ccgtcccgcatcggactgttgctggatatgactttgcgtgatatcgagcgcgtactctat
ttcgaagcatttgttgtcgttgatcctggcatgaccgagcttgaacgtggtcagctgctc
aatgatgaagcgtaccttgatgccatcgagcagtatggcgatgagttcgatgcacgaatg
ggtgctgaagccattcgtgatttgttacgtcagattgatcttgaaggtgagattcgcaat
cttcgcgaagagctgccaacgactaattctgaaacgaaaatcaagaaaattaccaaacga
ttaaagcttcttgaagcgtttcatgattctggtaataagccgcaatggatgataatggac
gttcttccagtgctgccacccgatttgcgaccgttggtaccgctggatggtggacgcttt
gcgacatcggatcttaatgacctgtatcgacgtgttattaaccgaaataatcgactgaag
cggcttcttgatttaaatgcgcccgatatcattgttcgtaacgaaaaacgcatgctgcag
gaatctgtggacgcgctgcttgataacggccgtcgcggacgtgcgattacgggctctaac
aagcgtccattaaaatcgcttgccgatatgattaaaggaaaacagggtcgttttcgtcaa
aacctgcttggaaagcgcgtggactactctggacgctcggtcattgtagtaggccctacg
ctgcgactgcatcagtgtggtctgcccaagaaaatggcacttgagctctttaagcctttt
atcttcagtaagcttgagtttcgcgggcttgcgaccactattaaagccgcgaagaagatg
gtagagcgcgaagatccagttgtctgggatatccttgatgacgtgattcgcgagcatcct
attcttttgaaccgcgcaccaacacttcacagactcggtattcaggcgtttgagcctgta
cttattgaaggcaaggccattcaactgcatccgctcgtgtgtacggcttacaacgccgac
tttgacggtgaccagatggccgtacacgtgccattgacgcttgagtcacagcttgaagcg
cgctcgctgatgatgtcgacaaacaacattctatctccggccagcggtgaacctattatt
gtaccgagccaagacgttgtacttggtctgtactacttaactcgcgaacgcattaatgcg
aagggtgaaggtaaagtatttgcaagcaccagcgaagcacagaatttctacgaggcagac
ctcatagaactgcatgcgaaagtacgtatccgcatgccggttgaactggtcggtgatgaa
gacgaagaaggcggcaaatcaggcggccagagcggttaccgacttgtagaaacaacggta
ggtcgtgcgattcttgcaggcatactgccaaaggggatgccgttttcaaccattaaccgt
ccgatgaccaaaaaggtcatctcacgagtagtcgatgcctgctaccgtcgctttggactg
aaagaaaccgttattttcgccgatcaactgatgtataccggctttaaatacgcgacccga
gccggagcgtctatcggcattaacgatatgattataccggatgataagcctgctattatt
gcccaggctgacaatgaagtgcgtgaaattgaatcgcagttccgctcaggtcttgtaact
aacggtgaacgttataacaaagtaatcgatatctggtcgcgcacgaacgaactcgtggcc
aagtctatgatgagcaaaattgccactgaagaagttgtgactcgggaaggtaagactgtt
cgacaggaatcctttaaccctatcttcatgatggccgattcaggcgcaaggggttctgct
gctcagattcgacagcttgccggtatgagggggcttatggcggcgccagacggctcaatc
attgaaacccccatcacagcaaacttccgtgaaggattgaacgtattccagtactttatt
tcaactcacggtgcgcgtaagggtcttgccgataccgcgcttaaaactgcgaactcagga
tatctgacacgtcgactcgttgacgttgctcaagacgttgtcatcactgaactcgattgt
aaaacggaacatggcatcatcatgcaaccgttgattgagggtggtgacattgttgagcca
ttgcatgaacgcgtacttggacgtgtagtcgcggcagatgtctatattccgaatcaggat
gaaccggtagtaactgccggtacactgctcgacgaagcgtgggttgagaagcttgagcaa
ctcggggttgatcaggttaaggtacgttcgccgattacctgtgaaactcgctttggtttg
tgtgcctactgctatggacgtgaccttgcacgtggacaccttgtaaatactggtgaggca
gtgggtattattgcagcacagtccattggagagccaggaacacagctcaccatgcgtacc
ttccatatcggaggcgcggcatcacgggcaactgctgcaaacagcatccagattcagaac
aaaggtactatccgactgcacaacattaagaccgttacgcactctaaaggctatctggtt
gcggtttcacgctctggagaagtctctgtagtggatacgtttggacgtgagcgtgagcgt
tatgatttgccctatggagcggtactttcggtgcacgatcaatctgctgctgaagccggg
cagattattgcgacctgggatccgcatacgcaccctgttgtctcagaagtggcgggtcgc
ttgaagtttgttgacctcgtagatgggattacgatgcaccgacagacggatgaggtaaca
ggccttagcaacattgtagtcactgatgctaaacagcgcagctcgtcaggcaaggaatac
cgtccgcttgtgaagctggtgtcagacagcggtgaagacattctgctggctggtacgaac
gttgctgcacagtactacctgccagtcgacgccattatcaactttgaagataatgctgtt
gttggcgtgggcgatgtgattgcaaaaatcccacaggaacgttcaaaaacgcgtgacatc
accgggggtttgccaagggttgcggatctctttgaggctcgcaagccaaaagactcagcc
gtaatggcagagaaaaccggtgtcgtcagctatggtaaagaaacgaagggtaaacgacgt
cttatcatcacctcacccaatggcgaagttcacgaagaacttattccgaaatggcgccca
atttctgtatttgagggtgagcatgtagagaagggtgaactgattgctgaaggtccactt
aatccacatgatattctgcgactgcttggtgttggtgaactcgcaaactacatcgttaac
gaagtacaggacgtatatcgactgcagggtgttaaaattaacgacaaacacattgaagtg
attgttcgtcagatgcttcgcaagcgtgttatcacgtttgcaggagattcgcgttttctt
gctggtgagcaggttgaagaatgcaccatgctgcaggaaaacgataagctgaaagatgcc
gataagatgcaggcggcaggtacgccaatccttctcggtattacgaaggcgtctcttgcg
actgaatcatttatttcagctgcatcgttccaggagacaacacgcgttctcacagaagct
gcagttagcggtaaagtggatgatttgcgtggcttgaaggagaacgtgatggtcggacgg
ctgatacctgcaggtactggctatgcctatcatcagtctcgaaaggcaaagcgtgcacga
attgcaggtggtgagcagtctcacgcaattacggcaagtgatgtagaacatgcattgagc
gaagcccttaatgcagaaaatcgcgaagagtga
DBGET
integrated database retrieval system
