Lysobacter gummosus: LG3211_0092
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Entry
LG3211_0092 CDS
T04163
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LG3211_0092 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgu03400
]
LG3211_0092 (recB)
Enzymes [BR:
lgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LG3211_0092 (recB)
DNA repair and recombination proteins [BR:
lgu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LG3211_0092 (recB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALN89082
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All DBs
Position
88672..92235
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AA seq
1187 aa
AA seq
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MNLARDPFLDLPLDGLRLIEASAGTGKTYTLATLVARLVIERGLRVSEILAVTFTDAATQ
ELRERLRRRLLLAARIAADDPALPADHDDAERAITRELVRAQAEQEGAAALRTRLQRAAR
EIDLAAVVTIHGFCARVLAEHALETGQAFAAPEMIGSERELLDEIALDLWRAFGSEATAA
ELLSLQWPGGPKSLASDLGALLRAPLLLPPAPAEAADPLPNLLHAADALRASFAQHGDDA
FAALDAAIAGKVLNGNSYRANLPRDLWSALKQWSANGDAAQPLDERIEKLTPAALAAKTN
KGKDAATPASPLFDAVAAYLDAAAQRDQWLAGQAVSLVHRIRDAARERLAELKRVRRVQS
FDDLIGDVAAALEGPEGEILAQRLREQYAVALVDEFQDTDPRQWAIFQRVFAQRALFLIG
DPKQAIYGFRGGDVHTYLTAAALADQAPPLDHNFRSRPSLLRAISALYAQAGETAFVDTR
IAFREVQAGGAVADADLQRDGATAPALTVRALPAPEDGRKKPEWSAPESRDLAARACVAA
IHGWLRDAREGRATIGARALLPADIAVLVRSHDEAARIQQALIAAGIPAVAAGRRSLFAT
AQAMEVLTLFDALLHPGDGGRLRAALATVLIGLDGAAIAQLAREDDLQRDWQLRALAWRE
RWQRHGPLALIADLCAEHAPRLLGLNDGERRLTNTLQLGETLQEADTRSLGLHGLRDWLR
LRIAEADDSDEKQQLRLESDAHRVQILTLHKSKGLEFGLVFMPFVAIGREPRGGRWCEYP
DPQRGRIMQLQTQVSDPRTPDWDSARERAAAEARAEDARLLYVGLTRARHALWIATGPLY
LAPASPLRPMLADLDALASGHEGEIVIDAALPEPAPTPLPPLASGAVPPAREARRSVPRD
WWVYSFTQLTNEDGGVAQAAQDERGAEDEPQTAAVALTPGDARYSGSRFGNVVHNALERV
DFAAWREWTPERPAPDGAPDILAAAMRGEGYVEADIDDGLPLLTSLVGLTLTARMPEGAR
LCEIAEHQRRSEMEFHFALESAPVDALLATLHAHGWLRDRRAFGLRRRLEGLMTGKIDLV
YAFEGRYYVLDYKTNRLPDYEPAQIERAMNESEYTLQSLIYTIALHRWLRFRLGEAYDYA
RDFGGVRYLFCRGLDPGDPAAGVHADKPARELVDAIDALFAGGRVAP
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcgcacgcgatcccttcctcgacctgccgctggacggcctgcgcctgatcgag
gccagcgccggcaccggcaagacctacaccttggccaccttagtcgcgcgcctggtgatc
gaacgcggcctgcgggtcagcgaaatcctcgcggtgaccttcaccgacgcggccacgcag
gaactgcgcgagcgcctgcgccgtcgtttgctgctggccgcgcgcatcgccgccgacgat
ccggccctgccggccgatcacgacgacgccgaacgcgcgatcacacgcgaactggttcgc
gcgcaagccgaacaagaaggcgcggccgccttgcgcacgcgcctgcagcgcgccgcgcgt
gagatcgatctagccgccgtggttaccatccatggcttctgcgcgcgagtgctggccgag
cacgcgctggaaaccggacaagccttcgccgcgccggagatgatcggcagcgagcgcgaa
ctgctggacgaaatcgccctggacctgtggcgcgcgttcggcagcgaggcgaccgcggcg
gaattgctgtcgctgcaatggccgggcgggccgaagtcgctggcctccgacctgggcgcg
ttgctgcgcgcgccgctgctgttgccgccagcgccggccgaagcggccgatccgctgccg
aacctgttgcacgccgccgacgcgctgcgcgcgagcttcgcccagcacggcgacgacgct
ttcgccgcgctcgatgccgctatcgccggcaaggtgctcaacggcaacagctaccgcgcg
aatttgccgcgagatctgtggtcggcgttgaagcagtggagcgcgaacggcgacgccgcg
cagccgctggatgagcgcatcgagaaactcacgccggccgcgctggccgccaagaccaac
aagggcaaggacgcggcgacgccggcttcgcccttgttcgacgcggtcgcggcgtacctg
gacgctgcggcgcagcgcgatcaatggctggcgggacaggcggtgagcctggtgcaccgc
atccgcgatgccgcgcgcgaacgcctggccgaactcaagcgcgtgcgccgggtgcagagc
ttcgacgatctgatcggcgatgtcgccgcggcgctggaaggccccgaaggcgagattctg
gcgcagcgcttgcgcgagcagtacgcggtggcgctggtggacgaattccaggacaccgat
ccacgccagtgggcgatcttccagcgcgttttcgcgcagcgcgcgctgttcctgatcggc
gatcccaagcaggccatctacggcttccgcggcggcgacgtgcacacctacctgaccgcc
gccgcgctggccgatcaggcgccgccgctggatcacaacttccgctcgcggccgtcgctg
ctgcgcgcgatctcggccttgtacgcgcaggccggcgagaccgcgttcgtcgatacccgc
atcgccttccgcgaagtccaggccggcggcgcggtcgccgacgccgacctgcaacgcgac
ggcgcgaccgcgccggccctgaccgtgcgcgcgctgccggcgcccgaggacggccgcaag
aaacccgaatggagcgcgccggaatcgcgcgatctggccgcgcgcgcctgcgtcgccgcg
atccacggctggctgcgcgatgcgcgcgaaggccgcgcgaccatcggcgcgcgcgcgctg
ctgccggccgacatcgccgtgctggtgcgcagccacgacgaagccgcgcgcatccagcag
gctctgatcgccgccggcattccggcggtggccgccggccggcgcagcctgttcgcgacc
gcgcaggcgatggaagtgctgactctgttcgacgcgctgctgcatccgggcgacggcggc
cgtctgcgcgcggcgctggcgaccgtgctgatcggcctggacggcgcggcgatcgcgcaa
ctggcgcgcgaggacgacctgcagcgcgactggcaactgcgcgcgctggcctggcgcgaa
cgctggcagcgccacggcccgctcgcgctcatcgccgacctgtgcgccgaacacgcgccg
cgtctgctcggcttgaacgacggcgagcggcgcctgaccaacacgctgcaactgggcgaa
accctgcaggaagccgatacccgttcgctgggcctgcacggcttgcgcgactggctgcga
ctgcgcatcgccgaggccgacgacagcgacgagaaacagcaactgcgattggaatccgat
gcgcaccgcgtgcagatcctgaccctgcacaagagcaagggcctggagttcggcctggtg
ttcatgcccttcgtcgcgatcggccgcgagccgcgcggcgggcgctggtgcgaatacccc
gatccgcagcgcggccggatcatgcagttgcagacgcaggtgtccgatccgcgcacgccc
gattgggacagcgcgcgcgaacgcgccgccgccgaggcgcgcgccgaagacgcgcgcctg
ctctacgtcggcctgacccgcgcccggcatgcgctgtggatcgcgaccgggcctctgtat
ctggccccggcctcgccgttgcggccgatgctggccgacctggacgcgctcgcgagcgga
cacgagggcgagatcgtcatcgacgccgcgctgcccgaacccgcgccgacgccgttgccg
ccgctggccagcggcgcggtgccgccggcgcgcgaagcgcggcgttcggtgccgcgcgac
tggtgggtctacagcttcacccaattgaccaacgaagacggcggcgtcgcccaggccgcg
caggacgagcgcggcgccgaagacgaaccgcagaccgcggcggtggcgttgacgccgggc
gatgcgcgctactccggcagccgcttcggcaatgtcgtgcacaacgccctggagcgcgtg
gatttcgccgcctggcgcgagtggacgccggagcggccggcgcccgacggcgcgccggat
atcctggccgcggcgatgcgcggcgaaggctatgtcgaagccgacatcgacgacggcctg
ccgctgctgacgtcgctggtcggcctgaccctgaccgcgcgcatgcccgaaggcgcgcga
ttgtgcgaaatcgccgagcaccagcgccgcagcgaaatggaattccacttcgccctggaa
tcggcgccggtcgatgcgctgctggcgaccttgcacgcgcacggctggctgcgcgatcgc
cgcgccttcggtctgcgccgccgcctggaagggttgatgaccggcaagatcgacctggtc
tacgccttcgaaggccgctattacgtgctcgactacaagaccaaccgactgcccgactac
gagccggcgcagatcgagcgggccatgaacgagagcgaatacaccttgcagtcgctgatc
tacaccatcgctctgcatcgctggctgcgcttcagactcggcgaggcctacgactacgcg
cgcgatttcggcggcgtgcgctatctgttctgccgcggcctggatccgggcgacccggcc
gcgggcgtgcacgcggacaaacccgcgcgcgaactcgtcgacgccatcgatgccttgttc
gccggcggcagggtcgcgccatga
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