Lysobacter gummosus: LG3211_1858
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Entry
LG3211_1858 CDS
T04163
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lgu
Lysobacter gummosus
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lgu03016
]
LG3211_1858 (rnd)
Enzymes [BR:
lgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LG3211_1858 (rnd)
Transfer RNA biogenesis [BR:
lgu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LG3211_1858 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ALN90828
LinkDB
All DBs
Position
complement(2042980..2044083)
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AA seq
367 aa
AA seq
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MPVWINTAAALQAHFQVKPARIGLDTEFIRERTYWPQLALVQIAIEREGEAEPTILLVDP
LRPGVNEALAPILADTAILKVVHSPSEDLVAFKHACGVVPKPLFDTQQAAALAGIGSGLG
YQKLVEQLTGVALAKGETRSDWMRRPLSPSQLEYAADDVLYLFAMHDALAGMLDQLGRGD
WLAEDAGRTVVNAENEAPERWPHLSMRSAQFLDLPAQRRLVRLLRWRDVYARDSDKPRSW
ILDNELAVALARQAPADRDALQRQLDAHPKAPRKLTETLWTALSTPLADEDEAPDAGVAE
TRDKQRLRQLQDAVASRSAALGLPDGVLASRRWLEALLDHGDWPDALSGWRRAALEPDLA
PLLAAER
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtctggatcaacaccgccgccgcgctgcaagcgcatttccaggtcaagcccgcg
cgtatcggcctggacacggaattcatccgcgaacgcacctactggccgcaactggctctg
gtgcagatcgccatcgagcgcgagggcgaggccgagccgacgatcctgctggtcgatccg
ctgcgtcccggtgtgaacgaggcgctggcgccgatcctggccgacacggcgattctcaaa
gtggtgcacagtcccagcgaggacttggtcgcgttcaagcacgcctgcggcgtggtgccc
aagccgctgttcgacacccagcaggccgcggcgctggccggcatcggcagcgggctgggc
tatcagaagctggtcgaacagctcaccggcgtggccctggccaagggcgagacccgctcg
gactggatgcgtcggccgttgtcgccgtcgcaactggaatacgccgccgacgatgtgctg
tatctgttcgcgatgcacgacgcgctggccggcatgctcgatcagctcggccgcggcgac
tggctggccgaagacgccggccgcaccgtcgtcaacgccgaaaacgaagcgcccgagcgc
tggccgcatctgtcgatgcgcagcgcgcaattcctcgacctgccggcccagcgccggctg
gtgcggctgctgcgctggcgcgacgtgtacgcgcgcgacagcgacaagccgcgcagctgg
attctggacaacgaactggccgtggccctggcccgccaggctccggccgatcgcgacgcc
ctgcagcgccagctcgacgcccaccccaaggccccgcgcaagctcaccgagaccttgtgg
acggcgctgagcaccccgctcgccgacgaggatgaggcgcccgatgccggcgtcgccgaa
acccgcgacaagcaacgcctgcgccagctgcaggacgccgtggccagccgcagcgccgcg
ctcggcctgcccgacggcgtgctcgcctcgcgccgctggctggaagcgctgctcgatcac
ggcgactggcccgacgccctgtccggctggcgccgcgccgccctggagccggatctggcg
cctttgctggccgccgaacgctga
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