Lysobacter gummosus: LG3211_2223
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Entry
LG3211_2223 CDS
T04163
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG3211_2223 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_2223 (pnp)
03016 Transfer RNA biogenesis [BR:
lgu03016
]
LG3211_2223 (pnp)
Enzymes [BR:
lgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LG3211_2223 (pnp)
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LG3211_2223 (pnp)
Transfer RNA biogenesis [BR:
lgu03016
]
Prokaryotic type
tRNA degradation factors
LG3211_2223 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_2
Phage_tube
KhpA-B_KH
KH_5
CRS1_YhbY
Motif
Other DBs
NCBI-ProteinID:
ALN91190
LinkDB
All DBs
Position
2423770..2425836
Genome browser
AA seq
688 aa
AA seq
DB search
MTLETGEIARQAGGSVIVKMDDTVLLVAAVAAKSAREGQDFFPLTVDYQEKFYAGGRIPG
GFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPEVDGDIPALIGAS
AALALAGTPFQGPIGAAKVGYKNGQYLLNPTATELLDSELELVVAGTSNAVLMVESEAKM
LSEEVMLGAVMFGHRELQKVINVINELVVEAGTKPSSWEAPAKNNALIGALKEAVGDQLT
QAFMVRDKLQRRDAIGAIKKDVLQSLTGRAEAEGWQSAELSKEFGELEYQTMRNSVLSTK
VRIDGRALDTVRPIASRVGVLPRTHGSSLFTRGETQAIVVATLGTARDGQIIDAVSGEYK
EHFLFHYNFPPYSVGECGRMMGPKRREIGHGRLAKRGVLAVMPTMEEFPYTIRIVSEITE
SNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEDDNFVVLSDILGDEDHLGDMDF
KVAGTATGISALQMDIKIQGITEEIMKVALDQAKAGRLHILGEMAHALTESRTELSEYAP
RLLTMKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNAAAAQAAKARID
QIVSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISNERVEKVSDKLKEGDLVK
VKVLEVDKQGRIRLSMKAVEEGEGVAAE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtgaccctggagaccggcgaaatcgcccgtcaggccggcggctccgtgatcgtcaagatg
gacgacaccgtactgctggtggcagccgtcgccgccaagagcgcgcgcgaaggccaggac
ttcttcccgctcaccgtggattaccaagagaagttctacgccggcggtcgcatcccgggc
ggcttcttcaagcgtgaaggccgtgcgaccgagaaggaaacgctgatctcgcgcctgatc
gaccgtccgatccgtccgctgttcccggaagactacaagaacgaagtccagatcatcgcc
acggtgatgtcgatgaatccggaagtcgacggcgacatcccggcgctgatcggcgcgtcc
gccgcgctcgcgctggccggcacgccgttccagggcccgatcggcgcggccaaggtcggt
tacaagaacggccagtacctgctcaacccgaccgcgaccgagctgctcgattccgagctc
gaactcgtcgtcgccggcacctccaacgcggtgctgatggtcgagtccgaagccaagatg
ctgtccgaggaagtcatgctcggcgcggtgatgttcggccatcgcgaactgcagaaggtc
atcaacgtcatcaacgagctcgtcgtcgaagccggcaccaagccgtcctcgtgggaagct
ccggctaaaaacaatgcgctgatcggtgcgctgaaagaagcggtgggcgaccaactgacg
caggccttcatggtccgcgacaagctgcagcgccgcgacgccatcggcgcgatcaagaag
gacgtgctgcagagcctgaccggccgcgccgaagccgagggttggcagagcgccgagctg
tcgaaggaattcggcgagctcgaataccagaccatgcgcaactcggtgctcagcaccaag
gtccgcatcgacggccgcgccctcgacaccgtgcgtccgatcgcctcgcgcgtcggcgtg
ctgccgcgcacccatggctcctcgctgttcacccgcggcgagacccaggccatcgtggtt
gccacgctgggcaccgcgcgcgacggtcagatcatcgacgcggtctcgggcgagtacaag
gaacacttcctgttccattacaacttcccgccttactcggtcggcgaatgcggccgcatg
atgggcccgaagcgccgcgaaatcggccacggccgcctcgccaagcgcggcgtgctggcg
gtgatgccgacgatggaagagttcccgtacaccatccgcatcgtctcggaaatcaccgag
tccaacggttcctcctcgatggcttcggtctgcggcagctcgctggcgctgatggatgcc
ggcgtgccgatcaaggcgccggtcgcgggcatcgcgatgggcctggtcaaggaagacgat
aacttcgtcgtcctgtccgacatcctgggcgacgaggatcacctcggcgacatggacttc
aaggtcgccggcaccgccacgggcatctcggcgctgcagatggacatcaagatccagggc
atcaccgaagagatcatgaaggtggcgctggatcaggccaaggccggccgtctgcacatc
ctcggcgagatggctcacgctctcaccgaatcgcgcaccgagctgtccgagtacgcgccg
cgtcttctgaccatgaagatccatccggacaagatccgcgaagtgatcggcaagggcggt
tcgaccatccaggcgatcacgaaggaaaccggcacccagatcgacatccaggacgacggc
accatcgtcatcgcttcggtcaacgccgccgccgcgcaggccgcgaaggcgcgcatcgac
cagatcgtgtccgacgtcgagccgggccgcatctacgaaggcaaggtcgccaagatcatg
gacttcggtgcgttcgtgacgatcctgccgggcaaggacggtctggtccacgtgtcgcag
atttccaacgagcgcgtcgagaaggtcagcgacaagctcaaggaaggcgatctggtcaag
gtcaaggtgctggaagtcgacaagcagggccgtatccgcctgtcgatgaaggccgtggaa
gaaggcgagggcgtcgcggccgagtaa
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