KEGG   Lysobacter gummosus: LG3211_2411
Entry
LG3211_2411       CDS       T04163                                 
Name
(GenBank) DEAD/DEAH box helicase family protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
lgu  Lysobacter gummosus
Brite
KEGG Orthology (KO) [BR:lgu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgu03400]
    LG3211_2411
Enzymes [BR:lgu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LG3211_2411
    5.6.2.6  RNA 3'-5' helicase
     LG3211_2411
DNA repair and recombination proteins [BR:lgu03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    LG3211_2411
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD WHD_4th_Lhr WHD_3rd_Lhr Helicase_C ResIII Cas3-like_C_2 PhoH DUF5805
Other DBs
NCBI-ProteinID: ALN91378
LinkDB
Position
2637821..2642263
AA seq 1480 aa
MLDDFHPAIAAWFRAAFPAPTQAQELAWPAIKAGRNTLVAAPTGSGKTLTAFLAAIDELV
REGLGPDNAGQGLRDETAVVYVSPLKALSNDIHLNLEAPLAGIAEQLKRMGLPDPGIRTA
VRTGDTPAGERTQMRKRPPHILVTTPESLYVLMGSESGRAMLSTVRSVIADEIHAVADDK
RGSHLSLTLERLRELCATPPVRIGLSATQKPIVEVARFLVGSDAVDADGVPDCAIVDIGY
AKQRDLALELPASPLSAVMSHEQWDEVYTRLAALVGEHRTTLVFVNTRRMAERAARHLAD
RLGKDAVAAHHGSLSRELRLDAEQRLKRGQLRVLVATASLELGIDIGDVDLVCQLGSPRA
IAAFLQRVGRAGHHVGGVPKGRLFPQSRDDLVECAALLDSVRRGELDALQIPPAPLDVLA
QQIVAEVAAREWSEDALYAWVRRAWPYAQLARKDFDAIVRMLADGFTTRRGPRASYIHRD
AVHGRVRARRGARLTAVMSGGTIPDTGDYAVLLEPEAQVIGNVNEDFAVESLAGDVFQLG
NASYRILRVEPGRVRVEDAQGQPPNIPFWLGEAPGRSDELSHSVSRLRAQVEALLSEAAD
AAGAARQLGQTLALDAEAALQLTDYLARTRQVLGVVPTQETLVFERFFDESGGTQLVIHS
PYGSRINKAWGLALRKRFCRKFNFELQAAATEDAIVLSLSTAHSFALEDVARYLHSASAQ
DVLIQALLDAPLFGVRWRWNATTSLALPRFIGGRKVAPQLQRMKSEDLLATVFPDQVACA
ENLVGEREVPEHPLVAQTLHDCLFEAMDSAGWLRMLRRLEAGEIRVVGRDVTGPSPIAAE
AINAKPYAFLDDAPIEERRTQAVMARRYAQADSADDLGRLDPEAIEAVRLEAWPEVRDFD
EMHEALMGLGYVTAEEARAPGWQGWLRELADSGRATALRLNPSDAEPSWWVATEGLPQAL
ALFPDAPATPPVRVPEEYAQAEWTAESALIDLLRSRLTALGPTTVAVLARDSRRDAGEIE
LALLRLESEGYVMRGRFSRESLLGGEEQWCERHLLARIHRYTVGRLRREIEPVAPRDFAR
FLADWQHLSKRARMSGPQALQAVLEQLEGFEAPACVWESELLPARIADYESSWLDELCAA
GRVTWARLRPNANAAGGDNAAPQGVPSVRQTPIVLLPRRALPDWRAAADRNADPAPVSSR
AQRVLSVLESRGASFFDELEHSAHLLRTELEEALGELVTRGRITCDSFAGLRALLVPPSK
RASTHGHRRRRAMLTDLQDAGRWSLTSATPLAVADAVNAPAQAARDAEAIEHIAWRLLER
YGVVFWRLIQREAGWLPPWRDLLRVYRRLEARGEIRGGRFIAGMTGEQYALPDAVNALRQ
VRQREHDGEIVCVSAADPLNLTGSVLAGTKVARIPGARIALRDGVAVASLLAGQVEEIET
LPAQDQREVHRLLVRRPDSASAAAESSIDQVLRNIAARSS
NT seq 4443 nt   +upstreamnt  +downstreamnt
gtgctagacgacttccatcccgccatcgccgcctggttccgcgccgccttcccggcgccg
acgcaggcgcaggaactggcgtggccggcgatcaaggccggccgcaacaccctggtcgcc
gcgccgaccggttcgggcaagaccctgaccgcgttcctggccgccatcgacgagctggtg
cgcgaaggcctgggcccggacaacgccggccagggtctgcgcgatgaaaccgcggtggtc
tacgtctcgccgctgaaggcgctgtccaacgacatccacctcaacctggaagcgccgctg
gccggcatcgccgagcaactgaagcgcatgggcctgcccgatccgggcatccgcaccgcg
gtgcgcaccggcgacactccggccggcgaacgcacgcagatgcgcaagcggccgccgcat
atcctggtgaccacgccggagtcgctgtacgtgctgatgggctcggaatccgggcgcgcc
atgttgtccacggtgcgttcggtgatcgcggacgaaatccatgccgtcgccgacgacaag
cgcggcagccatctcagcctgaccctggaacggttgcgcgagctgtgcgccacgccgccg
gtgcgcatcggcctgtcggccacgcagaagcccatcgtcgaagtcgcgcgcttcctggtc
ggcagcgacgcagtcgatgccgacggcgtgcccgattgcgccatcgtcgatatcggctac
gccaagcagcgcgatctggccctggaactgccggcctcgccgctgtcggcggtgatgtcg
cacgaacaatgggacgaggtctatacgcgcctggccgcgctggtcggcgaacatcgcacc
accctggtcttcgtcaacacccggcgcatggccgagcgcgccgcgcgccatctggccgac
cggctcggcaaggacgcggtcgccgcgcatcacggcagcctgtcgcgcgaattgcgcctg
gacgccgagcagcggctcaagcgcgggcaactgcgggtgctggtcgcgaccgcgtcgctg
gagctcggcatcgacatcggcgatgtcgatctggtctgccagctcggttcgccgcgcgcc
atcgccgcgttcctgcagcgggtcgggcgcgccggccaccatgtcggcggcgtgcccaag
gggcggttgttcccgcagtcgcgcgacgatctggtcgaatgcgcggcgctgctcgacagc
gtgcgccgcggcgaactcgacgccctgcagattccgccggcgccgctggacgtgctggcg
cagcagatcgtcgcggaagtcgccgcgcgcgaatggagcgaggacgcgctgtacgcctgg
gtgcgccgagcctggccgtacgcgcagctggcgcgcaaggacttcgatgcgatcgtgcgc
atgctggccgacggtttcaccacccgacgcggcccgcgtgcgtcctacatccatcgcgac
gccgtgcacgggcgcgtacgcgcccgacgcggcgcgcgcctgaccgcggtgatgtccggc
ggcaccattcccgataccggcgactacgcggtgctgctggaacccgaagcgcaggtgatc
ggcaacgtcaacgaagatttcgcggtcgaaagcctggccggcgacgtgttccagctcggc
aacgccagttaccgcatcctgcgggtggaaccggggcgggtgcgggtcgaggacgcccag
ggccagccgcccaacattccgttctggctcggcgaagcgcccggccgcagcgatgagttg
tcgcacagcgtgtcgcgtttgcgcgcgcaggtggaggcgctgctgagcgaggccgccgac
gccgccggcgccgcgcgtcaactcggccagaccctggcgctcgacgccgaagccgcgttg
cagctgaccgattatctggcccgcacgcggcaggtgctgggcgtggtgccgacgcaggaa
acgctcgtgttcgagcgcttcttcgacgaatccggcggcacccagctggtgatccattcg
ccctacggcagccgcatcaacaaggcctggggactggcgctgcgcaagcgtttctgccgc
aagttcaatttcgaactgcaggcggccgcgaccgaggacgcgatcgtgctgtcgctgtcc
accgcgcacagcttcgctctggaagacgtggcgcgttatctgcattcggcctccgcgcaa
gatgtgttgatccaggcgctgctcgacgcgcccttgttcggcgtgcgctggcgctggaac
gcgaccacctcgctggccctgccgcgcttcattggcggccgcaaggtggcgccgcagttg
cagcggatgaagagcgaagatctgctggcgacggtgttcccggatcaggtcgcctgcgcg
gagaatctggtcggcgagcgcgaggtgcccgagcatccgctggtcgcgcagaccctgcac
gattgcctgttcgaagcgatggacagcgccggctggctgcgcatgctgcggcggctggaa
gccggcgagatccgtgtggtcggccgcgatgtgaccgggccgtcgccgatcgcggccgag
gcgatcaacgccaagccgtacgccttcctcgacgatgcgccgatcgaagaacgccgcacc
caggcggtgatggcgcggcgttacgcccaggccgacagcgccgacgacctcggccggctc
gatccggaggcgatcgaggcggtgcgcctggaggcctggccggaagtgcgcgatttcgac
gaaatgcacgaagcgctgatgggcctgggctatgtcaccgcggaagaagcccgggcgccc
ggttggcagggttggctgcgcgagttggccgacagcggccgcgccaccgcgctgcgcttg
aacccatccgacgccgagccgtcgtggtgggtcgcgaccgaaggcctgccgcaggcgctg
gcgctgtttcccgacgcgccggcgacgccgccggtgcgggtgccggaggaatacgcgcag
gccgagtggaccgccgaatcggccctgatcgatctgctgcgttcgcgcctgaccgcgctg
ggcccgaccaccgtcgcggtgctcgcgcgcgacagccgccgcgatgccggcgagatcgaa
ctggcgctgctgcgcctggagtcggaaggctatgtgatgcgcggccgcttcagccgcgag
agcctgctcggcggcgaagaacaatggtgcgagcggcatctgctggcgcgcatccaccgc
tataccgtcggccgtctgcgccgcgagatcgaaccggtggcgccgcgcgatttcgcccgc
ttcctggccgactggcagcatctgtccaagcgcgcgcgcatgagcggcccgcaggcgctg
caggcggtgctggagcaactggaagggttcgaagcgccggcctgcgtgtgggaaagcgaa
ctgctgcccgcgcgcatcgccgactatgaatccagctggctcgacgaactgtgcgccgcc
ggccgggtcacctgggcgcgcctgcgtccgaacgccaacgccgccggcggcgacaacgcc
gcgccgcagggcgtgccgagcgtgcgtcagaccccgatcgtgctgctgccgcgccgcgcc
ttgcccgactggcgcgcggccgccgatcgcaacgccgatccggcgccggtgtcctcgcgc
gcgcaacgcgtgctgagcgtgctggaatcgcgcggcgcctcgttcttcgacgaactcgaa
cactccgcgcatctgctgcgcaccgaactggaagaagcgctgggcgaactggtcacccgc
ggccgcatcacttgcgacagtttcgccggcctgcgcgccttgctggtgccgccgtccaag
cgcgcctcgacccacggccatcgccgccgccgggcgatgctcaccgatctgcaggacgcc
ggacgctggtcgctgaccagtgcgacgccactcgcagtcgccgatgccgtgaacgctccg
gcccaggccgcgcgcgacgcggaagcgatcgaacacatcgcctggcgcctgctcgaacgc
tacggcgtggtgttctggcgcctgatccagcgcgaagcgggctggctgccgccgtggcgc
gatctgctgcgggtctatcgccgcctggaagcgcgcggcgaaatccgcggcggccgtttt
atcgccggcatgacaggcgagcaatacgccttgcccgatgcggtcaacgccctgcgccag
gtgcgccagcgcgaacacgacggcgaaatcgtctgcgtgtccgcggccgatcccttgaat
ctcaccggcagcgtgctggccggaaccaaggtcgcgcgcattcccggcgcgcgcatcgcc
ctgcgcgacggcgtcgcggtggcgagcctgctggccgggcaggtggaggaaatcgaaacc
ctgccggcgcaggatcagcgcgaagtgcaccgtctgctggtgcggcggccggacagcgcg
agcgcggcggcggagtcgagcatcgatcaggtgctgcgcaacatcgccgcgcgttcgagt
tga

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