Lysobacter gummosus: LG3211_3116
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Entry
LG3211_3116 CDS
T04163
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
lgu
Lysobacter gummosus
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lgu03016
]
LG3211_3116
Enzymes [BR:
lgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
LG3211_3116
Transfer RNA biogenesis [BR:
lgu03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
LG3211_3116
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ALN92074
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All DBs
Position
complement(3457911..3458498)
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AA seq
195 aa
AA seq
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MQQNSLFGAEPPPTADIHRLFFALLPDEATRERMAAVAAEVRAQHDAGGRLIGAHRYHLT
LQFLGDAHQFQAGRAAAAQQAAADIVAAAFDLPLDRAGSFRNRSIPWWLGCERTPEGLQT
LFDRLGVALAKRGVRVEGGHSLTPHVTIVRDAAAPLHPPIAIGPIAWRVSDFALIHSQLG
SRNAYTVLGQWPLAD
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagaactccctattcggcgcagagccgccacccacagccgacatccatcgcctg
ttcttcgccctgctgcccgatgaagccacgcgcgagcgcatggccgccgtcgccgccgaa
gtgcgcgcgcagcacgacgccggcggccgcctgatcggcgcgcatcgctaccacctgacc
ctgcaattcctcggcgacgcccaccagttccaggccggccgcgccgccgccgcgcaacag
gccgccgccgacatcgtcgcggccgcattcgatctgccgctggaccgcgccggcagcttc
cgcaaccgctcgatcccgtggtggctgggatgcgaacgcacccccgaaggcctgcagacc
ttgttcgaccgcctcggcgtggcgctggccaagcgcggggtgcgggtggagggcgggcac
agcctgaccccgcacgtgaccatcgtccgcgacgccgccgcgcccttgcatccgccgatc
gcgatcgggcccatcgcctggcgcgtgagcgacttcgccctgatccacagccaactgggc
tcgcgcaacgcctacacggtgctggggcaatggccgctggcggattga
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