Lysobacter gummosus: LG3211_3128
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Entry
LG3211_3128 CDS
T04163
Name
(GenBank) helicase conserved C-terminal domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG3211_3128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_3128
03009 Ribosome biogenesis [BR:
lgu03009
]
LG3211_3128
Enzymes [BR:
lgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG3211_3128
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG3211_3128
Ribosome biogenesis [BR:
lgu03009
]
Prokaryotic type
rRNA helicases
LG3211_3128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
P-loop_SecA
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ALN92086
LinkDB
All DBs
Position
3469955..3472084
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AA seq
709 aa
AA seq
DB search
MSADLPNTPSDSPAESPASPKFTDLALSAPLLRALADVGYESPSPIQAATIPPLLEGRDV
LGQAQTGTGKTAAFALPILAQIDPKQFKPQALVLAPTRELAIQVAEAFQKYAVHLPGFHV
LPIYGGQSYYPQLQALKRGVHVVVGTPGRVIDHLDRGTLDLSELRCLVLDEADEMLRMGF
IDDVENVLKKTPETRQVALFSATMPSQIKRIAQTYLKSPVEIAIKSTTTTAANIRQRYWS
VSGVHKLDALTRILEAESFDAMIVFSRTKLGTEELAEKLSARGISAAAINGDVQQAQREK
TIQNLKDGKIDVLVATDVAARGLDVDRISHVLNYDIPYDTESYVHRIGRTGRAGRKGEAI
LFVTPRERGMLRAIERATRQPIEPMELPSVETVNEQRVSRFLGRISDALESSDLGLFRDM
VERYERERNVPAVEIAAALAKLVQGDNPLLLTPPPAVPRYAREERDNPREHRGQATRKFV
ERDNASNSGAHRQEYRQDSRPDSRRAEAPRPPRDHERSAPAPRHEERQYTPPAAHRPVVN
NAESFFDDEAPSPRAERSERSHDRGAPREAEVGMETFRIEVGHSHGVQPGNIVGAIANEA
DLESRYIGRIDIRDDYTLVDLPEGMPRELMEHLKKVRVSGHPLRIQRATPGDTEGGRSPR
PGGGPGRGPGGPGGPRPGGPRPHSGAPRPGGPRPPHGGPKKSFKPRTPR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacttgcccaataccccctccgattcccccgccgaatccccggcttcgccg
aaattcaccgatctggccctgtccgcgccgctgctgcgcgcgctggccgacgtcggctat
gaatcgccttcgccgatccaggccgcgaccatcccgccgctgctggaaggccgcgacgtg
ctcggccaggcccagaccggcaccggcaagaccgccgcgttcgccctgccgatcctggcc
cagatcgatcccaagcagttcaagccgcaggcgctggtgctggcgccgacgcgcgaactg
gcgatccaggtcgccgaggcgttccagaagtacgccgtgcacctgcccggtttccacgtc
ctgccgatctacggcggccagagctactacccgcagctgcaggcgctcaagcgcggcgtg
cacgtggtcgtcggcacgccgggccgggtgatcgatcacctcgaccgcggcaccctggac
ctgtccgagctgcgttgcctggtgctggacgaagccgacgaaatgctgcgcatgggcttc
atcgacgatgtcgagaacgtcctcaagaagacgccggaaacgcgtcaggtcgcgttgttc
tccgcgaccatgccttcgcagatcaagcgcatcgctcagacctatctgaagagcccggtc
gagatcgcgatcaaatcgaccaccaccaccgcggccaacatccgccagcgctactggtcg
gtcagcggcgtgcacaagctcgatgcgctgacccgcatcctggaagccgaatccttcgac
gcgatgatcgtgttctcgcgcaccaagctcggcaccgaggagctggccgagaagctgtcg
gccaggggcatttcggccgcggccatcaacggcgacgtgcagcaggcgcagcgcgagaag
accatccagaacctcaaggacggcaagatcgacgtgctggtcgccaccgacgtggccgcg
cgcggtctcgacgtggaccgcatcagccacgtgctgaactacgacattccctacgacacc
gaaagctacgtccaccgcatcggccgcaccggccgcgccgggcgcaagggcgaggcgatc
ttgttcgtcactccgcgcgagcgcggcatgctgcgcgcgatcgagcgcgccacgcgccag
ccgatcgagccgatggagctgccgagcgtggagacggtcaacgagcagcgcgtctcgcgc
ttcctcggccgcatcagcgacgcgctggaaagcagcgacctgggcctgttccgcgacatg
gtcgagcgctacgagcgcgagcgcaacgtgccggcggtggaaatcgccgcggcgctggcc
aagctggtgcagggcgacaatccgctgctgctgaccccgccgccggcggtgccgcgctat
gcgcgcgaagaacgcgacaatccgcgcgaacaccgcggccaggccacgcgcaagttcgtc
gagcgcgacaacgcttccaactccggcgcccatcgccaggaataccgtcaggattcgcgt
ccggattcgcgccgcgccgaagcgccgcgtccgccgcgcgatcacgagcgttccgcgccg
gcgccgcgtcacgaagaacgccagtacacgccgccggccgcgcaccgcccggtggtcaac
aacgccgagtcgttcttcgacgacgaagcgccgtcgccgcgcgccgaacgcagcgagcgt
tcgcacgatcgcggcgcgccgcgcgaggccgaagtcggcatggagaccttccgcatcgag
gtcggccacagccacggcgtgcagccgggcaacatcgtcggcgccatcgccaacgaggcc
gatctggaaagccgctacatcggccgcatcgacatccgcgacgactacaccctggtcgat
ctgcccgagggcatgccgcgcgagttgatggagcatctgaaaaaggtgcgcgtgtccggg
cacccgctgcgcatccagcgcgccacaccgggcgacaccgagggcggccgttcgccgcgt
ccgggcggcggtcctggccgtggtccgggcggccccggcggcccgcgtccgggtggcccg
cgtccgcacagcggcgcgccgcgccccggtggtccgcgtccgccgcatggcgggcccaag
aaatcgttcaagccgcgtacgcctcgctaa
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