Lysobacter gummosus: LG3211_3170
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Entry
LG3211_3170 CDS
T04163
Symbol
pcnB
Name
(GenBank) poly(A) polymerase family protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG3211_3170 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_3170 (pcnB)
Enzymes [BR:
lgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LG3211_3170 (pcnB)
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LG3211_3170 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ALN92128
LinkDB
All DBs
Position
complement(3516120..3517433)
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AA seq
437 aa
AA seq
DB search
MRVIPRDQHNVSRKEISPNALRVLYRLRDSGFGAYLVGGAVRDILVGGHPKDFDVATDAT
PEQVKGLFRNCRLIGRRFRLAHVVYGREIIEVATFRANSDDGSGDRETDTGGRLVRDNVY
GSIEDDAVRRDFTANALYYAVEDFSVRDYTGGFEDVQNRLMRLIGDPETRYREDPVRMLR
AVRLAAKLGFEIEAATAAPIPHLAPLLADAAPARLFEECLKLFLSGHAVESFLGLERYGL
LSALLPESAAALKSNRSGALRRMVLEGLKGTDARVAADEPVSPAFLFALLLWPAYCRDLM
GLQAQGVHTAEAQRRAADRVTLHQLSTIALPRRFSLPMQEIWLLQSRFQQRQRKRVFRLL
SHPRFRAAFDFLVLRMAASDEHTSDVEFWREAQAHPNELLAQQEAQSQASAGEEGEEGDG
HAPRKRRRRRRGAPVAE
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
ttgcgggtgattccgcgcgatcagcacaacgtatcgcgcaaggagatcagtcccaacgcg
ctgcgcgtgctgtaccggctgcgcgacagcggcttcggcgcctatctggtcgggggcgcg
gtccgcgacatcctggtcggcggccatccgaaggatttcgacgtcgccaccgacgccacg
cccgaacaggtgaaggggctgttccgcaactgccgactgatcggccgccgcttccgcctg
gcgcacgtggtctacggccgcgagatcatcgaggtcgccaccttccgcgccaacagcgac
gacggcagcggcgatcgcgagaccgacaccggtggccggctggtgcgcgacaacgtctac
ggcagcatcgaggacgacgcggtgcgccgcgacttcaccgccaacgcgctgtactacgcg
gtcgaggacttctcggtgcgcgactacaccggcggcttcgaggacgtgcagaaccgtctg
atgcgcctgatcggcgatccggaaacgcgttatcgcgaagacccggtgcgcatgcttcgc
gcggtgcgcctggcggccaagctgggcttcgagatcgaagcggcgaccgccgcgccgatc
ccgcacctggcgccgttgctggccgatgccgcgccggcgcgcctgttcgaagaatgcctg
aagctgttcctgtccggccacgccgtggaaagcttcctcggcctggagcggtacggcctg
ttgtcggcgctgctgccggaaagcgccgcggcgctcaagtccaatcgcagcggcgcgttg
cggcgcatggtgctggaagggctcaagggcaccgatgcgcgcgtggccgcggacgagccg
gtatcgccggcgttcctgttcgccctgctgctgtggccggcgtactgccgcgacctgatg
ggcctgcaggcgcagggcgtgcacaccgccgaagcgcagcgccgcgccgccgaccgggtc
accctgcatcagctttcgaccatcgccctgccgcggcgtttctcgctgccgatgcaggaa
atctggctgctgcagtcgcgtttccagcaacgccagcgcaagcgcgtgttccgcctgctg
tcgcatccgcgcttccgcgccgcgttcgacttcctggtcctgcgcatggccgcctcggac
gaacacacaagcgatgtcgagttttggcgcgaggcgcaggcgcatccgaacgagctgctc
gctcagcaggaagcgcagtcgcaggcctcggccggcgaagagggcgaggaaggcgacggc
cacgcgccgcgcaagcgtcgccgccgccgtcgcggagcgccggtcgcggagtaa
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