Lysobacter gummosus: LG3211_3297
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Entry
LG3211_3297 CDS
T04163
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG3211_3297 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_3297 (rnr)
03016 Transfer RNA biogenesis [BR:
lgu03016
]
LG3211_3297 (rnr)
Enzymes [BR:
lgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LG3211_3297 (rnr)
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG3211_3297 (rnr)
Transfer RNA biogenesis [BR:
lgu03016
]
Prokaryotic type
tRNA degradation factors
LG3211_3297 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
HTH_51
OB_Dis3
DUF1918
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ALN92251
UniProt:
A0ABY3XD80
LinkDB
All DBs
Position
complement(3656455..3658896)
Genome browser
AA seq
813 aa
AA seq
DB search
MTKKPKSKKAGATGSKTPSRNTPGGAGKPRKAAASRPPWLPENLQHGPPAKGSRGKSAAA
PAPGPARAPAPYHDPYAEREASRYAQPIASRELILQTLAAADGPLRAEDLAQRLELTEDD
RADALGKRLGAMLRDGQLIQNRKGEFAPAAQMDLISGSVIANPDGFGFLRPEAGGDDLFL
PPYEMRKAMHGDRVLVSVTGVDRRGRREGAIVEVLERRLNRLIGRFTVEQGISYVVPDDR
RIQRNVQIPPDARMDAHNGQLVVCELVQAPDHKRPPIGRVLAVLGDKLTASLAVQAAIHG
HEIPDVFPQETLDEAAAVPLTVPESVSAQRVDLRQMPLVTIDGEDAKDFDDAVYCESNRD
GFRLVVAIADVSHYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLNPKVDRL
CFVCDMQVDREGQVSQSRFYEAVMNSHARLTYTTVWNAVGEVPEELRSEARAQVGSLLPH
IERLHQLFQVLLKARQKRGAIEFESSEVRFVLGKDGEVVQAGMLQRNDAHKLIEECMIAA
NVEAAKFLIAQQVPAPYRIHDRPPEQKYADLQEFLKEFKLRMPAWNQVEPRDFTQLLKKI
RERPDAALIESVLLRSQSLAVYAPENVGHFGLALEAYAHFTSPIRRYPDLLVHRAIKHAL
SGAKPIAYGYSPTQMAALALQCSERERRADEAEREVDERYRAAWMEQHVGGEFEGTISGV
TSFGLFIELDESKVNGLVHVTQLPHDYYHFDPIRKTLKGERTAREFRLGDRVQIVVLKAS
VEDRKIDFRLVEERGAKLLPPRGTPAKRPKQKY
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaacctaagagcaagaaggccggagccaccggcagcaagactccttcccgc
aacacgcccggcggcgccggcaaaccccgcaaggccgccgcttcgcgcccgccctggctg
ccggagaatctccagcacggcccgcccgccaagggctcgcgcggaaaatccgccgccgcc
ccggcccccggcccggcgcgtgcgccggccccgtatcacgatccctacgccgagcgcgaa
gcctcgcgctacgcccagccgatcgccagccgcgagctgatcctgcagaccctggccgcg
gccgacggcccgctgcgcgccgaagatctggcccagcgcctggaactgaccgaagacgat
cgcgccgacgcgttgggcaagcgcctgggcgcgatgctgcgcgacggccagctgatccag
aaccgcaagggcgaattcgccccggccgcgcagatggacctgatttccggctcggtgatc
gccaacccggacggcttcggcttcctgcgcccggaggccggcggcgacgatctgttcctg
ccgccgtacgaaatgcgcaaggccatgcacggcgaccgcgtgctggtcagcgtcaccggc
gtggaccgccgcggccgccgcgaaggcgcgatcgtggaagtgctcgaacgccgtctcaat
cgcctgatcggccgcttcacggtcgagcagggcattagctacgtcgtgcccgacgaccgc
cgcatccagcgcaacgtgcagattccgccggacgcgcgcatggacgcgcacaacggccag
ctggtggtgtgcgaactggtgcaggcgcccgatcacaagcgcccgccgatcggccgcgtg
ctggccgtgctcggcgacaagctcaccgcctcgctggcggtgcaggcggcgatccacggc
cacgaaattcccgatgtgttcccgcaggaaaccctcgacgaagccgcggcggtgccgctg
acggtgcccgaatcggtttccgcgcaacgtgtggatctgcggcagatgccgctggtcacc
atcgacggcgaggatgcgaaggacttcgacgacgcggtgtactgcgaaagcaaccgcgac
ggtttccgtctggtggtcgcgatcgccgacgtctcgcactacgtccgtcccggcacgccg
ctggacgatgaggcgcaaaagcgcgcgacctcggtgtacttccccggtttcgtcgtgccg
atgttgccggaaacgctgtccaacggtatttgttcgttgaacccgaaggtggaccggctg
tgcttcgtctgcgacatgcaggtcgatcgcgaaggccaggtcagccagtccaggttctac
gaagcggtgatgaactcgcatgcgcgcctgacctacaccacggtctggaacgcggtcggc
gaagtgccggaagaactgcgcagcgaagcgcgcgcgcaggtcggctcgctcctgccgcat
atcgagcgcctgcatcaattgttccaggtgctgctgaaagcgcggcagaagcgtggcgcg
atcgagttcgaatccagcgaagtgcgtttcgtgctgggcaaggacggcgaagtggtccag
gccggcatgcttcaacgcaacgatgcgcacaagctgatcgaggaatgcatgatcgcggcc
aatgtcgaggccgccaagttcctgatcgcgcagcaggtgccggcgccgtatcgcatccac
gaccgtccgccggaacagaagtacgccgatctgcaggagttcctgaaggaattcaagctg
cgcatgccggcctggaatcaggtcgagccgcgcgatttcacccagttgctgaagaagatc
cgcgagcgccccgacgcggcgctgatcgagtcggtgctgctgcgcagccagagcctggcg
gtgtacgcgccggagaacgtcggccatttcggcctggcgctggaggcgtacgcgcacttc
acctcgccgatccggcgttatccggacttgctcgtgcatcgcgccatcaagcatgcgctc
agcggcgccaagccgatcgcatacggatattcgccgacgcagatggcggcgctggcgctg
caatgctccgagcgcgaacgccgtgccgacgaggccgagcgcgaggtcgatgagcgctac
cgcgcggcgtggatggagcagcacgtcggcggcgaattcgaaggcaccatcagcggcgtg
accagtttcggcttgttcatcgagctggacgaatccaaggtcaatggtctggttcacgtg
acccagttgccgcacgactactaccacttcgatccgatccgcaagacgctcaagggcgag
cgcaccgcgcgcgagttccggctcggcgaccgggtccagatcgtggtgctcaaggccagc
gtcgaggatcgcaagatcgacttccgtctggtcgaggagcgcggcgccaagctcttgccg
ccgcgcggtacgccggcgaagcggcctaagcagaagtattga
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