Lysobacter gummosus: LG3211_3407
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Entry
LG3211_3407 CDS
T04163
Name
(GenBank) DEAD-box-containing ATP-dependent RNA helicase family member
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG3211_3407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_3407
Enzymes [BR:
lgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG3211_3407
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG3211_3407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Helicase_C_2
Flavi_DEAD
Cas3-like_C_2
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
ALN92354
UniProt:
A0ABY3XB20
LinkDB
All DBs
Position
complement(3766839..3768191)
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AA seq
450 aa
AA seq
DB search
MTFESLGLAPALLRALSEQNYINPTPIQAEAIPLALAGHDLLGGAQTGTGKTAAFGLPLL
HRLATTQGNTQRKPRVLILAPTRELALQVSDSLRGYAKYLRLNVHAIFGGAGMGPQLDAL
RRGVDVLVATPGRLIDHLERGSAKLDAVEMLVMDEADRMLDMGFLPAIKRILGRLPPQRQ
TLLFSATFETQIKQLALEFMRSPQQVQIASNSIVADAITHRVHPVDGGRKRDLLIQILAS
RPNDQVIVFGRTKHGCNRLSEQLEEAGLKSVAIHGNKSQAQRQKALRDFKANKARVLVAT
DVAARGLDIPSLPLVINFDLPMVAEDYVHRIGRTGRNGLTGEALSLVSPDEGGLLRQIQR
ILKDDIEMVTVAGFEPSRPIRMGSDAPGARRPGAPGGNNRGNNAPRKPAHRPHGKPASRH
AHAGPKQHRGGGAGAGAGAQQGQRRDRSAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgaatcgcttgggcttgcgcccgcgctgctgcgcgcgctgtccgaacagaac
tacatcaacccgaccccgatccaggccgaagcgatcccgctggccctggccgggcacgac
ctgctcggcggcgcccagaccggcaccggcaagaccgcggccttcgggctgccgctgctg
caccgtctggccaccacccagggcaacacccagcgcaagccgcgcgtgctgatcctggcg
ccgacccgcgaactggcgctgcaggtcagcgacagcctgcgcggttacgccaagtacctg
cgcctgaacgtgcacgccatcttcggcggcgccggcatgggcccgcagctcgacgcgttg
cgtcgcggcgtggacgtgctggtcgcgacccccggccgcctgatcgaccacctcgagcgc
ggtagcgccaagctcgacgcggtcgagatgctggtcatggacgaagccgaccgcatgctc
gacatgggcttcctgcccgcgatcaagcgcatcctcggccgcctgccgcctcagcgtcag
accctgctgttctcggcgacgttcgaaacgcagatcaagcagctggcgctggagttcatg
cgctcgccgcagcaggtgcagatcgcttccaacagcatcgtcgccgacgcgatcacgcac
cgcgtgcatccggtcgacggtggccgcaagcgcgacctgctgatccagatcctggcttcg
cgcccgaacgatcaggtgatcgtgttcggccgcaccaagcacggctgcaaccgtctgtcg
gagcagctggaagaagccggcctgaagtcggtcgcgatccacggcaacaagagccaggcg
cagcgccagaaagccctgcgcgacttcaaggcgaacaaggcccgcgtgctggtcgccacc
gacgtcgccgcgcgcggtctggacattccgagcctgccgctggtgatcaacttcgatctg
ccgatggtcgcggaagactacgtgcaccgtatcggccgcaccggccgtaacggtctgacc
ggcgaggcgctgtcgctggtgtcgccggatgagggcggtctgctgcgccagatccagcgc
atcttgaaggacgacatcgagatggtgacggtcgccggcttcgagccgtcgcgtccgatc
cgcatgggttccgacgccccgggcgcgcgtcgtccgggcgctccgggcggcaacaaccgc
ggcaacaacgctccgcgcaagccggcgcaccgtccgcacggcaagccggcgtcgcgtcat
gcgcatgccggtccgaagcagcaccgcggtggcggtgcgggcgcgggtgccggtgctcag
caggggcagcggcgggatcgcagcgcgggttga
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