Lysobacter gummosus: LG3211_3657
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Entry
LG3211_3657 CDS
T04163
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu00521
Streptomycin biosynthesis
lgu00523
Polyketide sugar unit biosynthesis
lgu00525
Acarbose and validamycin biosynthesis
lgu00541
Biosynthesis of various nucleotide sugars
lgu01055
Biosynthesis of vancomycin group antibiotics
lgu01100
Metabolic pathways
lgu01110
Biosynthesis of secondary metabolites
lgu01250
Biosynthesis of nucleotide sugars
Module
lgu_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
LG3211_3657 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
LG3211_3657 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
LG3211_3657 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
LG3211_3657 (rfbB)
00525 Acarbose and validamycin biosynthesis
LG3211_3657 (rfbB)
Enzymes [BR:
lgu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
LG3211_3657 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
ALN92599
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All DBs
Position
complement(4041861..4042898)
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AA seq
345 aa
AA seq
DB search
MTGGAGFIGGNFVLDAVGKGVKVVNLDALTYAGNLDTLSSLDGNANHVFVQGDIGDAALL
KRLLAEHRPEAVINFAAESHVDRSIDGPAAFVQTNVVGTLSLLEQVRDYWKSLDAPKRDG
FRFLHVSTDEVYGSLGDSGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNC
SNNYGPFQFPEKLIPLVIAKALAGEPLPVYGDGMNVRDWLFVGDHCAAIARVLEAGRIGE
TYNVGGEAERPNLTVVKTICALLDQRRPLADGRARESLITFVADRPGHDRRYAIDASKLH
DELGWKPTLTFEQGIARTVDWYLDHQPWVRRVLDGSYRLERIGQA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggcggcgccggtttcatcggcggcaacttcgtcctcgacgcggtcggcaagggc
gtgaaggtcgtcaatctcgacgcgctgacctacgccggcaatctcgacaccctcagctcg
ctggacggcaacgccaatcacgtcttcgtccagggcgacatcggcgatgcggccctgctc
aagcgcctgctggccgagcaccgtcccgaggcggtgatcaatttcgccgccgaaagccat
gtcgatcgctccatcgacggcccggccgcgttcgtgcagaccaacgtggtcggcaccctg
agcctgctggagcaagtgcgcgactactggaaatcgctcgacgcgcccaagcgcgacggc
ttccgtttcctgcacgtgtccaccgacgaggtctacggctcgctcggcgacagcggcaag
ttcaccgagaccacgccgtacgcgcctaactcgccgtactcggcttcgaaggcggcgtcc
gaccatctggtccgcgccttccaccacacctacggcctgccggtgctgaccaccaactgc
tcgaacaactacgggccgttccagtttccggaaaaactcattccgctggtcatcgccaag
gcgctggccggcgagccgctgccggtgtacggcgacggcatgaacgtgcgcgactggctg
ttcgtcggcgatcactgcgcggcgatcgcgcgcgtgctggaagccggccgcatcggcgag
acctacaacgtcggcggcgaggccgagcgtcccaacctcaccgtggtcaagaccatctgc
gccttgctcgaccagcgccgtccgctcgccgacgggcgcgcgcgcgagtcgctgatcacc
ttcgtcgccgatcgtcccggccacgaccgccgctacgccatcgacgcttccaagctgcat
gacgaactgggctggaagccgacgctgaccttcgagcaaggcatcgcccgcaccgtggac
tggtatctcgatcaccagccgtgggtgcggcgcgtgctcgacggcagctatcggctcgaa
cgcatcggccaggcctga
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