Lysobacter gummosus: LG3211_4287
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Entry
LG3211_4287 CDS
T04163
Symbol
rtcB
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lgu
Lysobacter gummosus
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lgu03016
]
LG3211_4287 (rtcB)
Enzymes [BR:
lgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LG3211_4287 (rtcB)
Transfer RNA biogenesis [BR:
lgu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LG3211_4287 (rtcB)
Prokaryotic type
tRNA splicing ligases
LG3211_4287 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
ALN93221
LinkDB
All DBs
Position
complement(4800115..4801299)
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AA seq
394 aa
AA seq
DB search
MPIKHWTRGVPLEDEARRQLQNIAKLPFIHRWVAVMPDVHLGKGATVGSVVPTVGAIVPA
AVGVDIGCGMIAVRTTLMAEDLPDQLGEVRAAIEKAVPHGRTVGRGQRDKGAWANPPEAS
LQRWAGLHEGFDRIIAKHPKLERSNHLSHLGTLGTGNHFVEVCLDEESRVWFMLHSGSRG
VGNAIGSHFIELAKQDMRRWMINLPDQDLAYLPEGSEHYDDYVFAVEWAQQFARSNRQIM
MQHVVEAVRTVIAKPFQAQAEAVNCHHNYVNREHHFGKDVLVTRKGAVSARKGELGIIPG
SMGAKSFIVRGLGNADSFHSCSHGAGRVMSRTEAKKRISLDDHAKATAHVECRKDADVVD
ESPAAYKSIDAVMAAQSDLVEIVHTLRQVVCVKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
gtgccgatcaagcactggacccgcggcgtgccgctggaagacgaggcgcgccgtcagctg
cagaacatcgccaagctgcccttcatccaccgctgggtcgcggtgatgcccgacgtgcac
ctgggcaagggcgcgaccgtgggttcggtggtgccgaccgtgggcgcgatcgtgccggcg
gcggtcggcgtggacatcggctgcggcatgatcgcggtgcgcaccacgctgatggccgag
gatcttccggaccagctcggcgaagtgcgcgcggcgatcgagaaggccgtgccgcacggc
cgcaccgtcggccgcgggcagcgcgacaagggcgcatgggcgaatccgcccgaggcttcg
ctgcagcgttgggccggtctgcacgaggggttcgatcgcatcatcgccaagcacccgaag
ctggagcgcagcaaccacttgagccatctgggtacgctcggcaccggcaatcacttcgtc
gaggtctgcctggacgaggaaagccgcgtgtggttcatgctgcactccggttcgcgcggc
gtcggcaacgcgattggcagccacttcatcgagctggccaagcaggacatgcgtcgctgg
atgatcaatctgccggaccaggacctagcgtatctgccagaaggcagcgagcactacgac
gactacgtgttcgcggtcgagtgggcgcagcagttcgcccgcagcaatcgccagatcatg
atgcagcacgtggtcgaagcggtgcgcacggtgatcgcaaagccgttccaggcccaggcc
gaggcggtcaactgccatcataattacgtcaaccgcgagcatcatttcggcaaggacgtg
ctggtgacgcgcaagggcgcggtgagcgcgcgcaagggcgagctgggcatcattcccggc
agcatgggcgcgaagagcttcatcgtccgcgggctgggcaatgcggacagcttccatagc
tgcagccacggcgccggccgcgtgatgagccgcaccgaggcgaagaagcgcatcagcctg
gacgaccacgccaaggcgaccgcgcacgtggaatgccgcaaggacgccgacgtcgtggac
gagtcgccggccgcgtacaagtcgatcgatgcggtcatggccgcgcagagcgacctggtc
gagatcgtgcataccctgcgtcaggtggtgtgcgtgaagggttga
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