Lysobacter gummosus: LG3211_5009
Help
Entry
LG3211_5009 CDS
T04163
Symbol
rhlB
Name
(GenBank) ATP dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG3211_5009 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_5009 (rhlB)
Enzymes [BR:
lgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG3211_5009 (rhlB)
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG3211_5009 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RhlB
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALN93942
LinkDB
All DBs
Position
complement(5647119..5648930)
Genome browser
AA seq
603 aa
AA seq
DB search
MSDKPLTDITFSSFDLHPSLLAGLEAAGFSRCTPIQALTLPIALTGRDVAGQAQTGTGKT
LAFLVTVVNRLLTRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLKFALVYG
GVDYDKQRELLQKGADVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDI
RFLLRRMPIRTERQTLLFSATLSHRVLELAYEHMNEPEKIVVETEFITAAKVRQKVYFPA
DEEKIPLLLGLLSRSEGARTMVFVNTKAWVERVARALERGGYRVGVLSGDVPQKKRESLL
NKFQKGQLEILVATDVAARGLHIDGVSHVYNYDLPFDAEDYVHRIGRTARLGAEGDAISF
ACERYAMSLPDIEAYIEQKLPTLPVDAELLVALPRTPREIPPGEEGDDDNESIGSIFKEA
REQRAADDARRGVTSRGSRSGGPGAGRSGGRSEGRRDGAPPRRERPRSEEGAAKPADVAG
AEAAAPRPPRKPRVEGAVTDAAHPGANPAAEGERAPRKRRRRRGGRRIEGAEGANPAQDA
TTSAAVAKPSSAGAPRPQSAKPAASKPAAPASAPAAGEAKPSLLGRIGRKLKSLVARPPR
TQH
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaagcctttaaccgacattacgttttcctccttcgacctgcacccgagcctg
ttggctggccttgaggccgccgggttttcgcgctgcacgccgatccaggcgctgactttg
ccgatcgcgctgactggccgcgatgtggccggccaggcccagacgggcaccggcaagacg
ctggcctttctggtcacggtggtgaatcgcctgctgacccgcccggccctggccgagcgc
aagcccgaagacccgcgcgcgctgatcctggcgccgacgcgcgagttggccatccagatc
cataaggacgcggtcaagttcggttccgacctgggcctgaagttcgccctggtctacggc
ggcgtggattacgacaagcagcgcgagctgctgcagaagggcgccgacgtcatcatcgcc
acgcccggccgcctgatcgactacgtcaagcagcacaaggtcgtatcgctgcacgcctgc
gagatgtgcgtgctcgacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgccgatccgcaccgagcggcagaccctgctgttctcggcg
acgctgagccatcgcgtgctcgagctcgcctacgagcacatgaacgagccggaaaagatc
gtcgtcgagaccgagttcatcaccgccgccaaggtgcgccagaaggtgtacttcccggcc
gacgaagaaaagatcccgctgctgctgggcctgctgtcgcgcagcgaaggtgcgcgcacg
atggtgttcgtcaacaccaaggcctgggtcgagcgggtggcgcgcgcgctggagcgcggc
ggttaccgcgtcggcgtgttgtccggcgacgtgccgcagaagaagcgcgagtcgctgctc
aacaagttccagaagggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggc
ctgcacatcgacggcgtcagccacgtctacaactacgatctgccgttcgacgcggaagac
tacgtgcaccgcatcggccgcaccgcgcgcctgggcgccgagggcgacgcgatcagcttc
gcctgcgagcgctatgcgatgagcctgccggacatcgaggcctacatcgagcagaagctg
ccgacgctgccggtcgatgccgagctgctggtcgcgctgccgcgcacgccgcgcgaaatt
ccgccgggcgaggaaggcgacgacgacaacgagagcatcggttcgatcttcaaggaagcg
cgcgagcagcgcgccgccgacgatgcgcgccgcggcgtgaccagccgcggcagtcgttcc
ggcggcccgggcgcgggccgcagcggcggtcgcagcgaaggccgccgcgatggcgcgccg
ccgcgtcgcgaacgtcctcgcagcgaagaaggcgcagccaagccggccgacgtggccggc
gccgaagccgccgcgccgcgtccgccgcgcaagccgcgggtcgaaggcgcggtgaccgat
gccgctcatccgggcgcgaatcctgcagccgaaggcgagcgcgcaccgcgcaagcgtcgc
cgccgtcgcggtggccgtcgcatcgaaggtgccgagggtgcgaatccggcccaggacgct
acaacgtccgccgccgtcgccaagccgtcgtccgctggcgcgccgaggccgcagtcggcc
aagccggcggcgagcaagccggccgcaccggcctcggcaccggccgccggcgaagccaag
ccgtcgctgctgggccgtatcggccgcaagctcaagtcgctggtggcgcgtccgccgcgc
actcagcactga
DBGET
integrated database retrieval system
