Lysinibacillus varians: T479_00370
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Entry
T479_00370 CDS
T03062
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lgy
Lysinibacillus varians
Pathway
lgy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T479_00370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_00370
Enzymes [BR:
lgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T479_00370
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
T479_00370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
AAA_16
Cas3-like_C_2
MFD_D3
RecG_dom3_C
ISP_coupler
AAA_22
UB2H
IstB_IS21
UBA
Motif
Other DBs
NCBI-ProteinID:
AHN20110
LinkDB
All DBs
Position
82590..86102
Genome browser
AA seq
1170 aa
AA seq
DB search
MEVLRQLVSQDKHITSFLQEIQSGNTASQLITGLTGSARPVMVDALFEHVQKPIYIVSPN
LLQAQKMADELVGLLGEEHVHYYPADEFIAADLAVASPELRAERIATLDCLARGEKAVYI
IPIAGLRKMMPPKEQWIHYFLQTAVGDEVQIEEWLQTLVAMGYVRNSMVTTPGEFALRGG
ILDIYPPYLEAPIRIELFDTEVDSIRTFSADDQRSIDKLREVRILPASEVILTMEERIAL
AGRLESALATSLKKVKKQETKELLYQHIQYDIELLQQGNLPDFVNKYGSLLYDKTAYLGD
YFAQNGIVLFDELGRIQEVMDAWEREEEEWFLSLIEEGKMVHDVKPAFSLKEILAMLSQQ
KLYFSLFSRTFAGITFSKTTNFSCKPMQQFHGQMALLQSEVERWQLGKFTVLIVARDKNR
VKRVQEMLEEYDIHATIGEPHDPGLYIVEGGLSSGFELPLQRLAIVTEDELFKQQAKKKS
RPQKMTNAERIKSYTEIKAGDFVVHVHHGIGKYIGVETLVVNGTHKDYLHIRYRADDKLY
VPVEQIDLIQKYVASEDREPKLHKLGGAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKG
HAFAPDNDDQRNFEASFPYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRDRFQDFAINVGLLSRFRTKKEQVATLKGLK
EGQVDIVIGTHRILSKDLTFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARKVEEIQMLVPEARIGYAHGKMTESQLESVILAFIEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAIAERQTGVKKEEKPEIEI
LLNVDAYIPDAYIPDGYQKIQMYKRIKAMDQVDEYEEIMEELQDRFGDLPIETERLLRIA
RMKIWGLEMGVSSIKEKQKVISILLSEEGSAKVDGSKIVSETMKFERAVGFGMDSMQLIL
TIDERKCIKYHHFDILEEIMQIIANSKKNM
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtggaagttttacgacagcttgtgtcgcaggacaaacatatcacatcatttttacaggag
attcagagcggcaatacagcatcacagcttattacaggtttaacaggaagcgcacgacca
gttatggttgatgcgttatttgaacatgtgcaaaaacccatctatattgtgtcacccaat
ttattgcaggcgcaaaagatggcggatgagcttgttgggttattaggagaggaacatgtt
cactattacccagccgatgaatttattgctgctgacttagcagttgcctcgccagagctt
cgagcagagcgtattgcgacgcttgattgccttgcgagaggtgaaaaagctgtttatatt
atcccaattgctggtttaagaaaaatgatgccgccaaaagagcagtggattcattatttt
ttacagacagcagtcggagacgaagtacaaattgaggaatggttacagacgctcgtagct
atgggctatgttcgtaattcaatggtaacgacacctggggagtttgcgttgcgtggaggg
attttggatatttatccgccctatttagaggcgccgattcgaattgagctatttgataca
gaagtggactccattcgtacattttctgcggatgaccagcgttcgattgataaattgcga
gaagtgcgtattttaccagcatcagaagtaattttgacaatggaagagcgaattgcttta
gcaggtcgattagaaagtgcgctagcgacaagcttgaaaaaagttaagaagcaggagaca
aaagagctgctgtatcaacatattcagtatgatattgaattgttgcaacaagggaactta
cctgactttgtaaataaatatggctcgttgctatatgataaaacagcttatttaggcgac
tattttgcacaaaatggtattgtattatttgatgagctaggtcgtattcaggaggtaatg
gatgcctgggaacgtgaagaggaagaatggtttttatcgttaattgaagaagggaaaatg
gtacatgatgtgaaaccagccttttctttaaaggaaatactggcgatgctgtcgcagcag
aagctttatttctcgctattttctcgtacatttgcgggtattaccttttctaaaacgact
aatttttcatgtaaaccgatgcaacaattccacggacaaatggcattattacaaagtgaa
gttgaacgatggcagcttggtaaatttaccgttctaatcgttgctagagataaaaaccgt
gtgaaacgtgtacaggaaatgcttgaggaatatgatattcatgcaacaattggagagcct
catgacccaggtctatacattgtagaaggcggattatcgagtggttttgaactaccattg
cagcgtctggcaattgtgacagaggatgaattatttaaacaacaagcaaagaaaaaatcg
cgccctcaaaagatgacaaatgcagagcgtattaaaagctatacagaaattaaagctggc
gactttgtcgtgcatgtgcatcatgggattgggaaatacattggtgtagaaacgctagta
gttaatggcacacataaggattacttgcatatacgctatcgtgcagacgataaattatat
gtacctgtggagcaaatcgatttaattcaaaaatatgtggcatctgaagaccgcgaaccg
aagctacataaattaggtggagcagagtggaaaaaagcgaaagcaaaggtttcctctgcc
gtacaagatattgcagatgatttaataaagctatacgccaagcgagaagcagaaaaaggg
catgctttcgcaccggataatgacgatcaacgtaattttgaggcatcgttcccttatgaa
gaaactgaggatcagcttcgttccatagtggaagtgaaacgtgatatggaacgtgaacga
ccgatggaccgccttgtatgtggtgacgtgggttatggtaaaaccgaagtagccattcgt
gcagcttttaaagccattcaggacggtaaacaagttgcctttttagtgcctacgacgatt
ttagcgcaacaacactacgagacaatccgtgatagatttcaggattttgctatcaatgtc
ggcttattatctcgtttccgtacgaaaaaagagcaagtagcgactttaaaaggattaaaa
gaagggcaagtagatattgtaatagggactcatagaatcttatctaaagatttaacgttc
caagatcttggcctattaattgtagatgaagaacagcgttttggtgttacccataaggaa
aaaataaaacaattaaaaacgaatgtggacgttttaacattaaccgcaacgcctattccg
agaacgttgcatatgtctatggtaggtgttcgtgatttatcggttattgagacacctcct
gccaatcgattcccagtacaaacctatgttatggagcatagtggggcacttgtgcgcgaa
gccattgagcgagaaatggcgcgtggtggtcaagtattttacttatacaatcgagtagag
gatatggcacgtaaagttgaggagattcaaatgcttgtcccggaagcgcgtatcggctat
gctcatggcaaaatgacggaatcgcaattggaatctgtgattttagcctttattgaaggg
gattatgatgttttagtaacgactacaattatcgaaacaggtgttgatattccgaatgta
aacacactgattgtccatgatgcagatcgcatgggcttagcacagctttaccaattacgt
ggccgtgtaggtcgctcaaatcgagtggcatacgcttactttatgtatcaacgtgacaaa
gtacttacggatgtagctgagcaacgattacaagcgataaaagagttcacagagctcgga
tctggatttaaaattgctatgcgtgatttatccattcgaggggctggcaatttattaggt
gcgcaacaacatggctttattgattcagttggttttgacttgtactcccaaatgctagaa
gaggccattgcagagcgacaaactggcgtgaaaaaagaagagaaaccagagatagaaatt
ttactcaacgtggatgcttatattcctgatgcgtatataccagacggctatcaaaaaatt
cagatgtataagcgcattaaagcgatggaccaagtggatgaatacgaagaaattatggaa
gaattacaagaccgttttggtgatttaccaattgaaacagaacgattgctgcgtattgca
cgcatgaagatttggggattagaaatgggcgtttcttctattaaggaaaagcaaaaggtc
atctccattttgctatctgaggaaggttcagccaaggtggatggaagtaaaattgtaagc
gagacgatgaagtttgagcgagctgttggcttcggtatggatagtatgcaattgatattg
acaattgatgagcgtaaatgcataaaataccatcattttgatatattagaagaaataatg
cagattattgcaaattccaaaaaaaatatgtga
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