Lysinibacillus varians: T479_03445
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Entry
T479_03445 CDS
T03062
Name
(GenBank) ATP-dependent helicase
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lgy
Lysinibacillus varians
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_03445
Enzymes [BR:
lgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T479_03445
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
T479_03445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Lipoprotein_20
Motif
Other DBs
NCBI-ProteinID:
AHN20610
LinkDB
All DBs
Position
729066..732575
Genome browser
AA seq
1169 aa
AA seq
DB search
MTLRIVSGRAGTGKSAYIHREIVEQLNTDPLGHPIFIIVPDQMSYSTEYELTNRHGLHGL
IRAQVMTFKRLAWLVLQETGGIARQEVNGYGYRMLIRKLLEEQKSDFSLFRQAAGKRGFT
EEIETLLREFSRYSVNSSVLSDVTTSLKAIDAPHTLQAKINDLYIVLQALEARLGTTYVD
SEGYYPILTEHLKFSETMKQATIYIDGFTAFTVRELELVKELLKVTKQVTVVLPYDHMEE
AKDEQALFNEAATTSQRLHDIAYDNGIEVEAPLHFIKTHRFQSKDLQHVEATFADMVPQT
EKSTGDVKVFEASNRRAEIHAIAREITKLTRQEGYRYQDIVLLYRQADVYDPLISTIFQQ
YDIPIFVNTKKTMLHHPLIEFSRSALEVVISNWKYEPLFRSVKTDLFFPLHADNSVWRER
ADRLENYCLAQGIYGERWFDESRWFYKKYRGLEFHSRVQTDEERAMQTEIEAIRDEIRTP
LKALQDKLILAKTGRDVATALFELVEEVQVYDKLQIMKDRELDRGEALAASEHDQAWKEW
IAVLDQFVYMFGEQEMSVQEAAKILDEGFDTLEFARIPPTLDEVMVATVDLARLSHIKVA
FVLGMNDGVYPTRLDYEGLLSDVEREWFTHIGYELAPTSKNRLLQENFLLYRAITTPSDK
LYMTYPTADEEGKALISSLYIKKIIGNEKTAGLLSGVNVERVVIDPIELLDDNVLPYIRH
PRTALAHLMLQLRQAEHSRELAPEWVALQKYYEQDPYWALILRRLMHPMTHKNEAEPLEG
YITQELYGRKLTSSVSRIEKYFRCPFSHFTTYGLRLEERAEYRLETFAMGDLFHEALKWI
TEETHRLQLSWIRLSKQQIQQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTM
MALTQHANVSHFKPIAIEASFGPGQHEQLPPLEIDLQGGKKMYMRGRIDRVDSASIDDRS
YLRIVDYKSSARDLDLNEVYHGLSLQVLTYLDVAMENASYWLSGDAEPAGVLYVHVHNPM
LKLDKDLSDSEIEEDRLKQYKMKGLLTENPEAIYSMDEQLEEASGHSQIIPVYMKKDGTP
SESQSRIVPVNDMKNLQHFVRRKHQEAGNGILAGDTAISPYKLKAKTACDYCQFAAVCQF
DPSDGKQSYRQLQQVKPVEVVEKIRKEMN
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacattacgaattgtatcaggacgtgcaggtaccggaaaatcggcttatattcataga
gaaatagtcgaacaattaaataccgatccattaggtcaccctatttttatcattgtccct
gaccaaatgtcttattcaactgaatatgaactgacaaatagacatggtttgcacgggctc
atacgtgcacaagtgatgacgtttaaacgcttagcttggcttgtacttcaagaaacaggg
ggtattgctcgccaagaagtaaatggctatggttatcgaatgcttattcgaaaattgcta
gaagagcagaagagtgatttttcgttatttcgacaagctgctggtaagcggggctttaca
gaggaaattgaaacgttgttacgcgaatttagccgttatagcgtgaacagttcagtttta
agtgatgtaacaacctctttaaaggcgattgatgcacctcatacactacaggcgaaaatc
aatgatttatacattgttttacaagcattagaagctcgactcggtacaacttatgtcgat
agtgaaggctattacccgattttaaccgagcacttaaaattttctgagacgatgaaacag
gcaacaatttatatagatggctttactgcctttactgtaagagagctagagcttgtaaaa
gaattactaaaggtgacgaagcaagtaacggttgtgctaccgtatgatcatatggaagaa
gctaaagatgagcaggcattattcaatgaagcggcaactacaagtcaacgcttgcatgat
atagcatatgacaatggcattgaagtcgaagcaccgttgcattttatcaaaacccatcga
tttcagtcaaaagacttacagcatgtagaagcaacatttgcggatatggtgccccaaaca
gaaaaatccacaggtgatgtgaaagtttttgaagcctcaaatcgtcgggctgaaatccat
gccattgcccgggaaataacgaagctgacgaggcaggagggctatcgttatcaagatata
gtgttgctgtataggcaagcagacgtatacgatccgctaatttcaacaatttttcagcaa
tacgacattcctatttttgtgaatacaaaaaaaacgatgcttcaccatccgttaattgaa
tttagtcgatctgcattggaagttgttatttcaaattggaaatatgaaccgcttttcaga
agtgtgaaaacagatttatttttcccattacatgctgataacagtgtttggcgtgaacgt
gctgaccgtcttgaaaattactgtttagcgcaaggaatttacggagagcgttggtttgac
gaatctcgttggttttataaaaaatatcgcgggcttgaattccattctcgtgtgcaaaca
gacgaagaacgtgcgatgcagacagaaattgaggccattcgcgacgaaattcgcacacca
ttaaaagcgttacaggacaagcttatactggcgaaaacgggtagagatgtggcaacagcg
ttatttgagctagtagaagaagtacaagtatatgacaagcttcaaatcatgaaagatcgt
gaattggatagaggagaggcgttagccgcaagtgagcatgatcaagcatggaaagaatgg
atcgccgtactcgatcagtttgtttacatgtttggcgagcaagaaatgtcggtacaggaa
gcggcaaagattttagatgaaggttttgatacattagaattcgcgcgtattcctccaact
ttagatgaagtgatggtggcaacggtcgatttagcgcgcctatcacacataaaagttgcc
tttgttctaggaatgaacgatggcgtctatcctacacgtctggattatgaaggtctattg
tctgatgtagaacgtgaatggtttacgcatattggctatgaattagcaccgacatctaaa
aatcggctattacaggaaaactttttattgtatcgtgcaataactacgccatctgacaag
ctttatatgacttatccaacggcggatgaagaggggaaagctttaatatcctcgttatat
ataaagaaaattataggaaatgaaaaaacggcaggtcttttaagtggggtaaacgtcgag
cgtgttgtcattgatccgatagaattacttgatgataatgtattgccttatattcgccat
cctcgtacagcgttagctcatttaatgctgcaattaaggcaagcggagcatagtcgtgaa
cttgcaccagaatgggttgctttacaaaaatattatgaacaagatccatactgggcatta
attttacgtcgcctgatgcatccaatgacacataaaaatgaggcagaaccgctagaaggt
tatattacacaagaattatatggtcgcaagctcacttcaagtgtgtcacgtatagaaaaa
tacttccgttgtccgttttctcacttcacgacgtatgggcttcgtttagaggaacgagca
gaatatcgtttagagacatttgcaatgggtgatttgttccatgaagcattgaaatggatt
accgaagagacgcaccgtttacaactgtcgtggattcgtttatcaaaacagcaaattcaa
caacttgcacgacaggcagtagagcaaattgtgcccgttttctctcaccaaattttatta
tctagtgcacgttatcgttatattcaacgtaagctgattcgcattgtagagcgcacgatg
atggcactgacacagcatgccaatgtgtcacactttaaaccaattgctattgaagcatcg
ttcgggccggggcagcatgaacagctaccgccattggaaattgatttgcaaggtggcaaa
aaaatgtacatgcgcggtcgtattgaccgtgtggatagtgcatcgattgatgatcgctcg
tatttacgaatagtcgattataaatcgtctgctcgtgacttagatttaaatgaagtgtat
catggcctatcattgcaggtgctaacgtatttagatgtagcgatggagaatgcatcctat
tggttatctggcgatgcagagcctgctggtgtgctttatgtccatgtccataatccgatg
ttaaaactggataaggacttgagtgacagtgagattgaagaagatcggttaaagcaatac
aaaatgaagggacttttaactgaaaatcctgaggctatttactcgatggatgagcagctt
gaggaagcgagcgggcattcacaaattattccggtttatatgaaaaaggatggtacccct
tctgaatcacaatcacgcatcgtgcccgttaatgatatgaaaaatctccagcattttgtc
cgccgtaagcatcaagaggctggcaacggcattttagcaggggatacggctataagtcct
tataagctaaaagcaaaaacagcgtgtgattactgtcaatttgcagcagtatgccaattt
gacccatctgatggcaaacaaagttatcgtcagctacagcaagtaaagccagtagaagtt
gtcgaaaaaattcgcaaggagatgaactaa
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