Lysinibacillus varians: T479_03450
Help
Entry
T479_03450 CDS
T03062
Name
(GenBank) ATP-dependent helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lgy
Lysinibacillus varians
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_03450
Enzymes [BR:
lgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T479_03450
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
T479_03450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
AAA_30
AAA_22
Thioredoxin_11
Motif
Other DBs
NCBI-ProteinID:
AHN20611
UniProt:
A0ABY2TED3
LinkDB
All DBs
Position
732577..736290
Genome browser
AA seq
1237 aa
AA seq
DB search
MVQQIPVKPANVTWTDDQWKAIYASGQDTLVSAAAGSGKTAVLINRMIEKVVATENPMNV
DELLVVTFTNASAAEMRHRMAEALEKAIAANPTSSHLRRQLSLVNKAQISTLHSFCLAIV
KQYAYLLDIDPGFRIANEAEIALLRDDILADVLESAYDTDDEARIHAIYQLVDSFTSDRD
DQAIETLISKLYDTSRVHAEPQKWLTSLPESYQLADDVTIDDLDLSKYVKLTLKHSLEEA
FVLISEMRAITLQPDGPAPYAETAEIDFAMIQEGIRISQEGTWQQLFDYFSTVKWSTLKR
VSKDALVDLELQELAKKKREAAKKIMNKLKDTYFVRTPARLLEEIRLMAPTIATLVDLTS
IFSQQFRLAKLERGIIDFSDLEHYALQILTEEVEGELQPSPVALDLQRRFKEVLVDEYQD
TNMLQETILQLVKLGDEHDGNLFMVGDVKQSIYRFRLAEPKLFMRKYGEFVENPDTTGMR
IDLNANFRSRSEVLNATNFVFAQIMDERVGEIQYDDNASLKPAAPYDAKEVPVELVILHP
PEEEAADEEMEESITEASELEELKKSQYEARFIIDRIRQLMEEGTTVYDTKTKTERPLKY
SDIVILMRSMTWSTDLVEEFKLAGIPLYAESSKGYFDALEVMIMLNTLKVVDNPYQDIPL
ASVLRAPFVGLTENELAKIRLADTKTPFYDALRQFIRSEGHGVQSETFEKLQRFMLAFEN
WRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANLRILHDRALMYEKTAFRGLFR
FLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGLEYPVVFVAGMGRPFNKMDFHN
PYLFDQDYGLAVKAIDPENRITYTSLPFLAMKEKKELEMRAEEMRVLYVAMTRAKERLIL
IGSVKNWDKTLDSWLDAQNLPVDAPLQDYLRARANSYFDWVGPAVARHADFAAITSTSYK
ARQDLSHWWVRAISTHHFMYETQALDEDVQQMFTTPEDAALLAEITARFQAQYAYQKSTQ
KRSKTSVSEIKRLESLQRLEEPEYYFTAPKKNKGTIAPRPTFLQDKQLTGAEMGTAIHTV
MQHVPQCGFSTVQEVEQFVTELVVKQLLTEAESKIVPCEKIYRFFTTDIGQRFKNAKQIR
REMPFTISCVDEDGDAQIVQGIVDCLFEDVYGHWILLDYKTDRIGRQFAEEPALSKELLG
RYGVQLRVYSEALESILHIQVYEKVLYLFDIEQAIYA
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagcaaatacctgtcaaaccagcgaatgtcacttggacggatgatcagtggaaa
gcgatttatgcaagtgggcaagatacacttgtttcagcagctgcaggctctggtaaaacg
gcggtcttgattaatcgcatgattgaaaaggttgtggcaacagaaaatccaatgaatgtg
gacgaacttcttgtcgtaacgtttacgaatgcttccgcagctgaaatgcgtcatcgtatg
gcagaggcgcttgaaaaagcaattgcagcaaatccgacgtcgagccatttgcgacgtcag
ttgagcctagtcaataaagcgcaaatctcgacattgcattccttttgtttagcaattgtt
aagcagtatgcttatttgctcgatatagacccaggtttccgaattgctaatgaggcagaa
atcgccttgctccgagatgatatattagctgacgtgctagaatctgcctatgatacagat
gacgaagcgcgaattcatgcaatctatcaacttgtcgatagttttacatcagatcgtgat
gatcaagcgattgaaacattaataagtaagctttatgatacgtcgcgtgtccatgctgaa
ccacaaaaatggttaacgagcttaccagaaagctatcagctagcggacgatgtgacaata
gatgatttagatttatctaaatatgtaaaattaactttaaaacatagccttgaagaagca
ttcgttctcatttctgaaatgcgtgcgataacgcttcagccagatggaccggctccatat
gctgaaaccgctgaaattgattttgcaatgattcaggaagggattcgtatcagtcaagag
ggcacatggcaacagctatttgattatttttcaacagtcaagtggtcgacattaaaacgg
gtatccaaggatgctttagtcgatttggagcttcaagagctagcgaagaaaaagcgtgag
gctgctaaaaaaataatgaataagttaaaagatacttattttgttcgtacacctgcacgt
ttgctggaagaaattagactgatggcgccaacgattgcaacattagttgacttgacgtct
atttttagccagcaattccgtcttgcgaaattagagcgaggtattatcgatttctccgac
ttagagcattatgccctgcaaatcttaacggaagaggtagagggcgaattacagccatcg
cccgttgcgttagatttacaaagacgttttaaagaagtgctggtggatgaataccaagat
acgaatatgctacaggaaaccattttacaattggtcaagctaggcgatgagcacgatggc
aacctttttatggttggtgacgtaaaacaaagtatctatcgcttccgtttagcggaacct
aaactttttatgcggaagtatggggagtttgtagaaaatcctgatacgacggggatgcgc
atcgatttgaatgccaatttccgtagtcgtagtgaagttttaaacgcaaccaattttgtg
tttgcacaaattatggatgaacgtgtcggtgaaatacaatatgatgacaatgcttcattg
aagccagcagcgccgtatgatgcgaaagaggtacctgttgagctcgtgattttacatccg
ccagaggaagaggcagcggatgaagaaatggaagaaagtataactgaagcatcagagctt
gaggaactgaagaaatcacaatatgaggcacgttttataattgatcgcattcgacaattg
atggaagagggaacaacggtatacgatacgaaaacaaaaacagaacgtcctttaaaatac
agtgatattgtcattttaatgcgctctatgacgtggtctacagatttggtcgaggaattt
aagttggcaggcattcctctttatgcagagtcatctaaaggttatttcgatgccttagaa
gtgatgattatgttgaacacactaaaagttgtcgataatccatatcaagatataccatta
gcttctgtattacgtgcaccgtttgttggcttaacagaaaatgagctcgcaaaaattcgt
ttagcagatactaaaacaccgttttatgatgcattaaggcaatttatacgcagtgaagga
catggtgtgcaatccgaaacatttgagaagcttcaacgttttatgttggcatttgaaaac
tggcgagatttagcacgtcgtggctctttgtcggatttaatttggaaaatttacttggat
acacattattatgaaatggttggtgccatgccgaatggtaaacaacgacaagcaaattta
cgcattttacacgatcgcgcattaatgtatgaaaagacggcgtttcgagggttgttccgc
tttttacgctttatagatagaatgcgaacgcgtggggatgatttaggaacagcaaagtcg
attggtgaaaaagacgatgtagtgagacttgtaacaattcactcatccaaaggtttagag
tacccagttgtttttgttgcaggaatgggacgaccttttaacaaaatggacttccacaat
ccgtatttatttgaccaagattatgggcttgcagttaaagcaattgaccctgaaaatcgg
attacctatacttctttaccatttctagcgatgaaggagaaaaaagagctggagatgaga
gccgaagaaatgcgggtgttgtacgtagcaatgacgcgtgcaaaggaacgacttatttta
attggctccgtaaaaaattgggataaaacacttgattcctggctggacgcgcaaaacttg
cctgtggatgctcctttgcaagattatttacgcgcgcgtgcaaatagttattttgactgg
gttgggccagctgttgcgagacatgctgattttgcagctattacaagtacttcgtataaa
gcaagacaagatctctcgcattggtgggtaagagccatttcaacacatcattttatgtat
gaaacgcaagcgttagatgaagatgtgcaacagatgttcacaacgccagaggacgcagct
ctgcttgcagaaattacagctcgcttccaagctcaatatgcatatcaaaaatcgacacag
aagcgttcgaaaacatctgttagtgaaattaaacgtctagaaagcttacaacgtctagag
gagccagaatactattttaccgctcctaaaaagaataagggtacgattgccccacgacca
acctttttacaagataagcagcttacaggtgcggaaatggggacagccattcatacggtc
atgcagcatgtaccacaatgtggctttagcacagtgcaagaagtggagcaatttgtcact
gagttagtggtaaaacaactgctaaccgaggcagagagcaagattgttccgtgtgagaaa
atttaccgtttctttacaaccgatattggccaacgttttaaaaatgcgaagcaaattcga
agagaaatgccatttacgataagctgcgtggatgaggatggcgacgctcaaattgtgcaa
gggattgtcgattgcttgtttgaggatgtctacggtcactggatattactcgattataaa
accgaccgcattgggcggcaatttgcagaggagccggcgttatcgaaggaacttttaggt
cgctatggggtgcaactacgtgtttatagcgaggcacttgagtcgattttacacatacaa
gtatatgagaaagtgttgtacttatttgatattgagcaggcgatttatgcgtag
DBGET
integrated database retrieval system
