Lysinibacillus varians: T479_17460
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Entry
T479_17460 CDS
T03062
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lgy
Lysinibacillus varians
Pathway
lgy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
T479_17460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_17460
Enzymes [BR:
lgy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
T479_17460
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
T479_17460
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
T479_17460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DNA_ligase_ZBD
PknG_rubred
Motif
Other DBs
NCBI-ProteinID:
AHN22873
LinkDB
All DBs
Position
complement(3439457..3440329)
Genome browser
AA seq
290 aa
AA seq
DB search
MPELPEVEGVVQALKPEVEGRTIKQVQLSEIVRFSYDEGKQCIVKQAEPDAFEMALSQMT
ITKIERRAKYIFFHLVKEDVSYVLVSHLGMTGAWFIVNTPEEINEEKFKKHIHATFQMAD
GGYLIYSDIRRFGELRFLTKIEDHAPLTKMAPEPFDEIACDYFIAKSLLPKYEKKAVKEV
IMDGQVISGCGNIYATEALFAQKIHPARKMNRISEKRKRALFGAIVDVLRQSIEAGGSTI
SDYRNINGEAGSMQNRLQMYGKKICPVCGTGTSQMTIGGRTSVYCPNCQH
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaggtagaaggtgtcgtgcaggcattaaagccggaagttgaaggt
cgcacaattaagcaggttcaactgtcagaaattgtccgcttttcttatgatgaaggaaag
caatgtatcgttaagcaagctgagcccgatgcatttgaaatggcattatctcaaatgacg
attacgaagattgagcgccgtgctaaatatatattttttcatttggtgaaagaagatgtt
tcctatgtattagtcagtcatttaggcatgacaggtgcatggtttatcgtcaacacgcct
gaagaaatcaatgaagaaaaatttaaaaagcatatccatgcgacttttcaaatggcagat
ggtggctatttaatttattcagatattcgccgttttggtgagttgcgatttttaacgaaa
attgaagatcatgcgccactgacaaaaatggcgcctgaaccgtttgatgagatagcatgt
gattattttatagccaaatccttgctaccgaaatacgagaaaaaggctgttaaagaagtc
attatggacggacaagtgatttcgggctgtggcaatatatatgcgacagaagcattattt
gctcaaaaaattcacccagcccgcaaaatgaaccgcataagtgaaaaacgaaaacgtgca
ctttttggggcaattgttgacgtcctgcgtcaaagtattgaagcgggaggttcaacgatt
tcggattatcgtaatattaatggcgaggcaggaagcatgcaaaatcgattacaaatgtac
ggtaaaaagatatgcccagtgtgtggaacagggacgagtcaaatgacaattggtggacgt
acatctgtatattgtccaaattgtcaacattaa
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