Lysinibacillus varians: T479_20545
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Entry
T479_20545 CDS
T03062
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
lgy
Lysinibacillus varians
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_20545
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
T479_20545
Archaeal homologous recombinant proteins
T479_20545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_15
GTP_EFTU
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AHN23346
LinkDB
All DBs
Position
complement(4027416..4030496)
Genome browser
AA seq
1026 aa
AA seq
DB search
MKPLKLTITAFGPYKHTEVIDFQQLGEYRLFAISGKTGAGKTTIFDAICYALYGAGSGED
RQDTAMLRSGFAADDVYTAVELVFEMRGKVYHILRQPGHIKAKNKSVTGRKVELAEIKDG
KFDFSIVEKQQTNEVDKKLLEIIGLTKDQFSQIVMLPQGEFRKLLTSDSSNKEVILRKIF
KTDRFNAMTKKLDIKRKEAEKDVERAQQLKEHLLGQIAGALPQRSSTLFTCISNNTYNMH
QLKNALEEEQFFYNASIQTEQLRYEEAYAHHQKEQEYYSMAKALNEQFEQQEQRQARLQM
LLQQQHLYTAKEQEIQLAEQAERLLTFEQQCVELRTEQNHKEQLYQQATINHQNALAQLA
IAQQLFSEEEAKEPARQQILQQEMQLLALLPKFEAFEHNQQQLEITQQLVDNAKRAVADN
LNILEKEQTQLQELTTTIEQYEKQMEPYAGYLEQLPKLKEQVTLLAQLEKYEQASELAEQ
AFQRAQQLYQESNKALQTKEQQWITSQASILAAKLKDGDACPVCGSTTHQLTHSEPLAIV
DEVELETIRATAHANERNYYEKEATVKTTKQLLQEVAEQVEASHISLADRVDLTTSLQFI
EQQVTVLKIVNDQLSIARTKLKEQLARNEQLQHKQVQLEHYFAEQSKELIKQQAIVEEQQ
KYIPEHVKSLQQLKQTMEDIKSQKNALQAAWNASQHNLQATKEASHKAAIAEELAKKAYE
ELQNKLNEKREQFVTSMNNVGFTTYEAYAAAKRSVVQIEELRKACRDYALQQHSLQQQIL
DGAQHLEGKEKQNLTILEDKLEMLRATSEEAFKILQQTKNYATACADFIVKVDETAREIR
ILEKEAGRVKELYTVLNGQNPKKLSFERYIQINYLDKITAAANLRLFHLSNGQFELRRSD
RLEKHAKQSGLGLDVYDAYTDQLRDVKTLSGGEKFNASLSLALGMADVIQSFQGNIQIET
MFIDEGFGSLDEEALNKAIDTLIDLQDSGRMIGVISHVAELKAAMPAVLHVEKTLSGHST
THFEVK
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccactcaagttaacgattactgctttcggtccatataaacatacagaagtgatt
gatttccaacagcttggagagtaccgtttatttgctatttcaggcaaaacaggcgctggg
aaaacgacgatttttgatgcgatttgttatgcgttgtatggtgcaggaagtggtgaagat
cgtcaggatacagctatgcttcggagtggctttgctgcggatgatgtttacaccgcagta
gaattggtatttgaaatgcgcggtaaagtgtatcacattttacgccaaccaggtcatatt
aaagcaaaaaataaaagtgtcactggaagaaaagttgaattagcagaaataaaggatggt
aaatttgactttagtatagtggagaagcagcaaacaaatgaagtagataaaaaactgctt
gaaattatagggctaacaaaagatcagtttagtcaaattgtgatgttgccccagggggaa
tttcgcaaattattaacttctgattcctcgaataaagaagtcattttacgtaaaattttt
aaaacagatcgttttaatgcaatgaccaaaaaactagatatcaaaagaaaagaagccgaa
aaggatgtcgagcgtgcccagcaattgaaagaacatttacttggacaaattgcaggtgca
ttaccacaacggtcatcaacactatttacttgtataagcaataatacgtataatatgcat
caactaaaaaatgcccttgaagaagagcaattcttttataatgctagtatccaaacggaa
cagctccgctatgaagaagcctatgcgcatcatcaaaaggaacaagaatattacagtatg
gcgaaagcgctgaacgagcagttcgaacaacaggagcaacgacaagcccgtttgcaaatg
ctgttacaacaacaacatttatatacagcgaaggaacaggaaatacaattagctgaacaa
gcggagcgtcttcttacttttgaacaacagtgtgtagaattacggacagagcaaaatcat
aaggaacaactttatcagcaagcgacaataaatcatcaaaacgctttggcacaactagca
atagcccagcaattattttcagaggaagaagcgaaagaaccagctcgtcagcaaatattg
caacaagaaatgcagctattagcgctgttaccaaagtttgaggcatttgagcataatcag
caacaactagaaataacgcaacaacttgttgataatgctaaacgtgcagtagcagataat
ctaaacattttagaaaaagagcaaacccaacttcaagagttaacaacaaccattgagcaa
tatgaaaaacaaatggagccctatgcgggttatttagaacaacttcctaagcttaaagaa
caagtcacattattagctcaattggaaaaatatgagcaagcgagtgagctagctgagcaa
gcgtttcaaagggcgcaacagctctatcaagaaagtaataaagcgctacagactaaggaa
caacaatggattaccagtcaggcaagtattttagcagccaagttaaaagatggcgatgct
tgtccagtttgtggcagtacaacacaccaattaacacatagtgagccactagcaatcgtg
gatgaagtggagctggaaacaatccgcgcgacagctcatgcaaatgagagaaattattac
gaaaaagaagcaacagtcaaaacaacaaagcaattgcttcaagaggtggctgaacaggta
gaagctagccatatatcactagctgatcgagtagatcttacaacttcattacaattcatt
gagcaacaagttactgttttaaaaatcgttaacgatcaactatctatcgcacggactaag
ctaaaagagcaactggcaagaaatgaacaattacaacacaaacaagtccagttagagcac
tattttgccgagcagtcgaaagaattaattaaacagcaagcaattgtagaagaacaacaa
aagtacattcctgaacatgtaaagtcattgcaacaattaaagcaaacaatggaagatata
aaatcgcaaaagaatgcattacaagcagcatggaacgcgagccagcataatctacaagca
acaaaagaagcgtcacataaggcagctatagcagaagaactggcaaaaaaagcctatgag
gaattgcaaaacaaactgaatgaaaaacgagaacaatttgtcacaagcatgaacaatgta
ggttttacaacatatgaagcatatgcggcggcaaagcgaagtgttgtacaaatcgaggaa
ttacgtaaagcgtgccgggattacgctttacaacagcactctttacagcaacaaatctta
gatggagcacaacatcttgaaggaaaagagaagcaaaatttaacgatattagaagacaag
cttgagatgttacgagctacatctgaagaagcatttaaaatattgcaacagacgaaaaat
tatgcaacagcatgtgctgactttattgttaaagttgatgaaacggcgagggaaatacgg
atactcgaaaaagaagcaggccgtgtaaaagaactttacaccgtgttgaatggtcaaaat
cctaaaaaactgtcatttgagcgttatattcaaatcaattatttagataagattacagca
gcagccaatcttcgtttattccatttatcaaatggacagtttgaattgcggcgctctgat
cgcttggagaagcatgccaagcaaagtgggttagggttagatgtgtatgatgcttatacg
gaccaattaagagatgtaaaaacattatctggtggggagaagtttaatgcatcattaagt
cttgcattaggtatggcagatgttattcaaagcttccaaggaaatattcagattgaaacg
atgtttatcgacgagggctttggttctttagatgaggaagcgttaaataaagcaattgat
acgttaattgatttacaagattcaggaagaatgattggtgttatttcacatgtagctgag
ttaaaagccgcaatgccagccgttttacatgttgaaaaaacattaagtgggcatagtaca
acacactttgaagtaaagtag
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