Lysinibacillus varians: T479_23080
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Entry
T479_23080 CDS
T03062
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
lgy
Lysinibacillus varians
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_23080
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
T479_23080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_25
ATPase
Zn_ribbon_LapB
Lon_C
ChlI
AAA_22
DnaB_C
ABC_tran
RecA
AAA_16
nSTAND3
NTPase_1
AAA_5
ATPase_2
KdpD
AAA_24
AAA_30
DUF7125
SLFN-g3_helicase
MeaB
MCM
AAA_14
KTI12
GvpD_P-loop
DAP3
CbiA
AAA_29
NPHP3_N
AAA
AAA_31
NACHT
ArsA_ATPase
DUF7129
Motif
Other DBs
NCBI-ProteinID:
AHN23771
LinkDB
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Position
complement(4534619..4535995)
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AA seq
458 aa
AA seq
DB search
MAKKKIKFVCTGCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGPRGAFQHSATVTQKAVP
IIQVEAAEESRVATEMGELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHR
VLYISGEESIRQTKLRAERLGVVSQELYIYSETNLELLNQTIDDVQPKFVIVDSIQTVFH
PEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASM
EGTRPILVEIQSLVTPTSFNYPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAG
GVKLDEPAIDLAVLTSIVSSFKDQAVRGTDCFIGEVGLTGEVRRVTRIEQRVLEAAKLGF
KRAFIPASNIGGWDFPQGIEIVGVETIKDALNACFREL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaaaaaattaaatttgtctgtacaggttgtggctatgaatcggcaaagtgg
atgggacgttgtccaggatgtggtgaatggaataaaatggttgaggaagtggaggttgta
gcaaaaggccctagaggagcattccaacactctgcaaccgtcacgcaaaaagctgtacct
attatccaagtagaagcggctgaggagtcccgtgtagctacagaaatgggtgaactcaat
cgtgtcttgggcggaggaattgttccgggatctctagtgttaatcgggggtgatccgggt
atcggaaaatcgacattgctattacaggtgtctgcgttattgtccaataaaggtcatcgt
gtgctctatatttctggtgaggaatccattcgacaaacgaaactgcgtgcagagcgttta
ggggttgtatctcaagagctgtatatatattcggagacgaatttagaattgttaaatcaa
acaatcgacgatgtacaaccaaagtttgttattgtggattctatccaaacggtgttccat
ccagaggtgacaagtgcgccaggtagtgtatcgcaagtacgtgaatgtacagcggagcta
atgcggatagcgaaaacaaaaggcattgccattttcttagttggacatgtgacgaaggaa
gggcaaattgcgggaccgcgtattttagagcatatggtagatacagtgctgtatttcgaa
ggagaacgacatcacaaccaccgtattttacggagccaaaaaaaccgctttggctctaca
aatgaaatagctatctttgaaatgcttcaggggggcttaaaggaagttttgaatccgtct
gagctatttttacaggaacgttcacaaggtgcagcaggttcaacaatcgtggcatcgatg
gagggaacaaggccaattttagtagaaatccaatcacttgtaacccctacaagctttaat
tatccgaaacggatggcaacaggggtggaccaaaaccgtgtgcaattgcttatggcagtg
cttgaaaagcgcatgggcctcatgttacaggcacaagatgcatatattaaagttgctggc
ggagtaaagctagatgaacctgccattgacttagctgtcttgacgagtattgtgtctagc
tttaaggatcaggcagtacggggaacagattgctttattggagaagtagggttaacagga
gaggttcgtcgtgtcacacgaattgaacaacgtgtgctagaggcggcaaagctagggttt
aagcgagcatttatccctgcttctaatattggcggttgggatttcccacaaggtattgaa
atagttggtgtggaaacaattaaagatgcattaaatgcctgctttagagagctttaa
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