Listeria grayi: NCTC10812_00205
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Entry
NCTC10812_00205 CDS
T06340
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lgz
Listeria grayi
Pathway
lgz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10812_00205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgz03400
]
NCTC10812_00205 (mfd)
Enzymes [BR:
lgz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10812_00205 (mfd)
DNA repair and recombination proteins [BR:
lgz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10812_00205 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
VEI30843
LinkDB
All DBs
Position
1:196423..199962
Genome browser
AA seq
1179 aa
AA seq
DB search
MEGLKQLLYDQKDIQSIIKALDDKKAAQLVTGLSGSARALFASVVESAGKRTVLIVTHNL
YHAQKLYDDLESLVDKDKLFLYPADELISSELSVSSPELRGQRVEVLQFLLSQKPGVVVV
PVAGLRRVLPPKSLWQKNNLTITQGEEIEPNQLRERLVTMGYTASQMVNTPGEFSVRGGI
IDVYPITEEFPVRIELFDTEIDSLRYFDVETQRSQKKVDTFQLLPATEILIEQEDFPAIV
TRLEKHLAASLQALSKDEDKQTLMENIEEDLELLRSGIKPDMLFKYIGFIYEQQGTLLDY
AAENTVLMLDEYARIQETEERLEKEEADWQVEQLEALKTVRDVALSHQLKPLLDNHQLPT
IYLSLFQKAGNIRITKTTNLVYKQMQQFHGQMNILKTELDSWHKNNYAVILLAPNLERAE
KMQQTLADYEMESVILKREQDVPKYGVVQFLIGDFNNGFELPLAKFVVVSEAELFNKKTV
KKTKKRQKLSNAERIQSYSELKVGDYVVHINHGIARYVGMETLNIGGVHKDYLNLIYQGE
DKLFVPVDQLEMIQKYVGSEGKAPRLHKLGGTEWKRVKSKVKASVQDIADDLIKLYAERE
AEKGYAFTPDSEMQREFEDAFPYQETDDQIRSIKEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHYETMKERFQGFPIEVGLLSRFRTKKQQNETL
EGLKKGTVDIVVGTHRLLSKDVVYSDLGFLVVDEEQRFGVTHKEKIKTIRAKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAERNNVMIREAIERELAREGQVYYLY
NRVESIVQKADEISALVPDARVAFAHGQMTETELESVIVSFLEGEYDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRSNRIAYAYFMYQKDKVLREEAEKRLQAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEARQPSEERKERV
PTVEIDLELDAYIPEYYISDGRQKIEMYKRFRSITERDELEELQADLIDRFGDYPDEVEY
LVTITELKIAALIVGVESVKQEPKKVTILLSDKGTQQIQGDKVMQTISEYGRNVGIGMEG
TRLKLTMNIQRKQQKEWLEQLKVMVEKLQHARKETVASS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcttgaagcaattattatatgatcagaaagatatccaatcgatcataaaggcg
ctggacgataaaaaagcagcgcaattagtaacaggactatcgggctctgcacgtgcactt
ttcgcaagtgttgtggaaagcgctggcaaacggacagttttgatcgtgacacacaacctt
tatcatgcgcaaaaactatacgacgatctggaatcgcttgtagataaagataaactgttt
ttatatccggcagacgaactgatctcctcggagttgagcgtttctagtccagaactccgc
ggtcagcgcgtggaagtactgcaatttctgctgtcccaaaaaccgggagtagtggttgta
ccggtagcagggcttagaagggtcttgccgccaaaatcattatggcaaaaaaacaacctg
acgatcacgcaaggcgaggagatcgagccgaatcaactgcgggaacggcttgtaacaatg
ggatatacagcaagtcaaatggtcaatacgccaggagaattcagcgtgcgcggtggaatc
attgatgtctatcccattactgaagaatttccagtgcgaatcgaactctttgataccgaa
atcgattctctacgttattttgatgtggaaactcagcggtcgcaaaagaaagtcgatacg
ttccagcttttaccagctacagaaatattgatcgaacaggaggatttcccggcaattgta
actcgcttggaaaaacacttagctgcctctctgcaagcactgagtaaagacgaagataag
caaacattgatggaaaacatcgaagaagacttagaattgcttcgttccggtattaaacca
gacatgcttttcaaatatattggtttcatttatgaacagcaaggcacccttttggattat
gccgctgagaataccgttctgatgctcgatgaatatgcgcgtatccaagaaacggaagaa
cgcttggagaaagaagaagcagactggcaagtggaacagctcgaagcattaaaaacagtg
cgagatgtagcactgagtcaccaattaaaacccttgttggacaatcatcaactgccgacg
atctatttatctttatttcaaaaagccggcaatattagaatcacaaaaacaacgaatctt
gtttacaaacaaatgcagcagttccatggacagatgaatattctgaaaaccgaattagac
agctggcataaaaataattatgcagttatcttgctagcgccaaatttggaacgtgcggaa
aaaatgcagcagacattagctgattatgagatggaaagcgttattctgaaaagagagcaa
gatgtgccgaagtacggagtcgtccaatttttgattggcgatttcaataatggttttgaa
ctgccacttgcgaaattcgtagtcgtcagtgaagcggaattattcaataaaaaaaccgtc
aagaaaacaaaaaaacgccaaaaattatcgaatgccgaacggatccaaagctattccgag
ctaaaagtcggcgattacgtggtacacatcaatcacgggatcgcgcgctatgtggggatg
gaaactctgaatattggtggcgtacacaaagattacttgaatctgatctatcaaggcgaa
gataaattattcgtgcccgtcgatcaactggaaatgatccaaaaatacgttggctcggaa
gggaaagcaccgaggcttcataagttgggcggaacagaatggaaacgagtgaagagcaaa
gtaaaagcatctgtgcaagatattgcggatgacttgatcaaattatatgctgagcgggaa
gcggaaaaaggttatgcctttacgccagacagcgaaatgcagcgagaatttgaagatgcc
ttcccttaccaagaaaccgatgatcagatccgttcgatcaaagaaatcaagaaagatatg
gaaagaccacgcccgatggatcgcttgctagtaggcgacgttggttatgggaaaaccgaa
gttgcactccgagcggctttcaaagcaatcatggacggtaagcaagtagcgttcttagtt
ccaacgacgatccttgcccagcaacattatgaaacaatgaaagaacgtttccagggattc
ccgatcgaagtcgggctgctcagcagattccgtacaaagaaacagcaaaacgaaacatta
gaaggcttgaaaaaaggaaccgtcgacattgtcgttggaacccatcgccttctttctaaa
gatgtggtttatagcgatttaggttttctagttgtcgatgaagaacagcgtttcggcgtt
acgcataaagaaaaaatcaaaacgatccgtgcgaagatcgatgtgctgacactaactgct
acaccgattccgcggacgttgcatatgtcgatgctgggcgttagagatctgtcagtcatt
gaaactccgccagccaaccgctttcctgtacaaacgtatgtggcagaacgcaataatgtc
atgattcgggaagcgatcgaacgcgagttggcaagagaaggacaagtgtattacctttat
aatcgcgtcgaaagtatcgttcagaaagccgacgagatctctgcacttgttccagatgct
cgcgttgcctttgcgcacggacaaatgacggaaacagagttagaatcggtgatcgtcagc
tttttagaaggtgaatacgatgtactggtaacgacaacgattattgaaacaggcgtagat
atcccgaacgtcaacacgctgtttgtccaagatgcagaccgcatggggctttcacaactt
tatcaactccgcggccgggtcgggcgctctaaccgtattgcttacgcttatttcatgtat
caaaaggacaaagtattacgggaagaagcagaaaaacgactgcaagcgatcaaagaattt
accgaacttggctctggttttaaaatcgcaatgcgcgatttatcgatccggggagcagga
aacattttaggagcgcagcagcacggctttattgattccgtcggcttcgatctttactcg
caaatgctgaaagaagcgatcgaagctcgtcagcctagcgaagaacggaaagaacgcgtt
ccaactgtcgaaatcgacttagaactagatgcctatatcccggaatactacatttctgac
ggccgacaaaagatcgagatgtacaaacgtttccgcagtatcactgagcgggatgagctc
gaagaattgcaagcagacttgatcgaccgttttggtgactacccggatgaagtagaatat
ctggttacgatcacagaactgaaaatcgccgcgttaattgtcggtgtggaatctgtaaaa
caagaaccgaaaaaagtcacgatcttgctctccgataaaggaacacagcagatccaaggt
gataaagtaatgcaaacgatctccgaatatggccgtaacgtagggatcggcatggaaggc
acacgtctgaaattaacaatgaatatccagcgtaaacagcaaaaagaatggctagaacaa
ttgaaagtaatggtggagaagctacagcacgcacgtaaagaaacagtagcatcttcctga
DBGET
integrated database retrieval system
