Listeria grayi: NCTC10812_01340
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Entry
NCTC10812_01340 CDS
T06340
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lgz
Listeria grayi
Pathway
lgz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10812_01340 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgz03019
]
NCTC10812_01340 (rny)
Messenger RNA biogenesis [BR:
lgz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10812_01340 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
DUF4407
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
VEI33978
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Position
1:1339952..1341520
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AA seq
522 aa
AA seq
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MTNLIIFTSISGLLFLIVGLVVGYVFFKSSTEKKLAAARGTAELIVEDAKKEAETAKKEA
LLEAKEENHKLRTEIENELRGRRTELQKSENRLLQREENLDRKDTSLSKREAALERKEES
ISKRQQHIEEEESKLAEMVRQEQVELERISALSKEEAKGIILNQVEEELSHDTAIMVRES
EARAKEDADKKAKNILSLAIQRCAADFVAENTVSVVTLPNDEMKGRIIGREGRNIRTLET
LTGIDLIIDDTPEAVILSGFDPIRREIARIALEKLVQDGRIHPARIEEMVDKARKEVDEH
IREIGEQATFDIGIHSIHPDLIKILGRLRYRTSYGQNVLNHSLEVARLAGIMAGELGEDV
TLAKRAGLLHDIGKAIDHEIEGSHVEIGVELATKYKENEVVVNSIASHHGDTDPTSIIAV
IVAAADALSAARPGARSETLENYIRRLEKLEEISESYDGVEKSYAIQAGREVRIMVEPDT
IDDLASYRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatctaattattttcaccagcatctccggtttgcttttcttaatcgtcggtctc
gttgttggttatgtattctttaagtctagtacagagaaaaaattagcagctgccagagga
actgctgaattgatagtagaagatgcgaaaaaagaagcagaaactgcgaaaaaagaggcg
ttgcttgaagctaaagaagaaaaccataagttacgtactgaaatcgaaaatgaacttcgt
gggcgaagaacagagttacaaaaatcagaaaatcgcttattgcaaagggaggaaaacctc
gaccgtaaagatacttctctaagtaagcgagaagctgcacttgagagaaaagaggagagt
atcagtaaacgacaacaacatattgaagaggaagaaagcaaacttgctgagatggttcga
caagaacaggtggaattagaacgcatttctgcgcttagcaaagaagaagcgaaagggatc
atcctgaaccaggtagaggaagaacttagccacgatacagcaattatggtgagagaatca
gaggcgagagcaaaagaggatgcggataagaaagcgaaaaacattctatccttagccatc
caacgttgtgcagccgattttgttgctgaaaacactgtatccgttgttacccttccaaat
gacgaaatgaaaggccgcatcatcggtcgtgaaggacgaaatatccgtacactggaaaca
ttgactggtattgatcttatcattgatgatacgccggaagctgttatattatctggcttt
gatccgattcgtcgtgagattgctcgaatcgcacttgaaaaacttgtccaagacggacgt
atccatcctgcacgtatcgaagaaatggtcgataaagcgcgcaaagaagtggatgaacac
attcgtgaaatcggagaacaagcgacatttgacatcggaatccattcgattcatcccgat
cttattaagatccttggtcgtttgcgttaccgtacaagttatggtcaaaacgtcttgaat
cattcgctggaagtagcgagactggctggcatcatggctggtgagctaggcgaagatgtg
acacttgccaaacgtgctggtttgcttcatgatattgggaaagcaattgaccatgaaatt
gaaggaagccatgtcgaaatcggcgttgagcttgctacgaagtacaaggaaaatgaagta
gtcgtgaatagtatcgcttcccatcacggggataccgatccaacttcgattattgctgtc
attgttgctgccgcagatgcactttctgcagcgcgtccgggtgcaagaagcgaaacgttg
gaaaactacatccgtcgtcttgagaaactggaagaaatttccgaatcttatgatggtgta
gaaaaatcttacgcgatccaagctggccgtgaagttcgtatcatggtggaaccagacacg
atcgatgatttagcttcttaccgtttagcacgcgatatccgcaaacggattgaagatgaa
ctcgattaccctggtcatatcaaagtaacggtcattcgtgaaacaagagcagtagaatat
gccaaataa
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