Listeria grayi: NCTC10812_01492
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Entry
NCTC10812_01492 CDS
T06340
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lgz
Listeria grayi
Pathway
lgz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lgz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC10812_01492 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgz03400
]
NCTC10812_01492 (recD)
Enzymes [BR:
lgz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC10812_01492 (recD)
DNA repair and recombination proteins [BR:
lgz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC10812_01492 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
UvrD-helicase
HHH_5
NB-ARC
TsaE
AAA_12
AAA_28
NTPase_1
NPHP3_N
DUF4926
AAA
AAA_17
AAA_29
AAA_16
Motif
Other DBs
NCBI-ProteinID:
VEI34288
LinkDB
All DBs
Position
1:complement(1490929..1493316)
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AA seq
795 aa
AA seq
DB search
MEEQGSLLEQPEELFIKGTILSTIFHNADNLFSVVRLLVKDTNTNWDERDIVVTGYFPAL
HEEEVYLFYGKMKEHPKFGQQFHAERFQKEMPQSREGVISYLSGELFKGIGKVIAENIVD
TLGKDAISRILADPSLLDNVPKLPEAKALTLIDTLRENQGLEHVMVKLNEYGFGPQLSMR
IYQAYKQDAIEVIEKNPYRLIEDVRGIGFQRADELGRKLGLSGAHPDRIRAGLLYTMDQI
SMQQGHVYMEEEPLIQEVIHLLQESEPVTISHEEVAKELLVLAEEQKLIRENTRIYLPSL
YFAESGFAYHVKRMMKQTEYAEQFPESEFLLALGELEERLQVSFGETQKEAIKQALMSPM
LALTGGPGTGKTTVIKGIVELFAELHGLSLDPHAYKDGAAFPILLAAPTGRAAKRMSEST
GLPAMTIHRLLGMNGQENLDDESERSIDGRLLIVDEMSMVDVWLANQLFRALPAHMQVIL
VGDQDQLPSVGPGQVLKDILESKQLPTVELTDIYRQKDGSSIIEMAHAIKEGQLPPDFTK
NSADRSFFHCQVGQISDVVEQVVKNAKAKGFRAKDIQVLAPMYRGPAGIDILNRQLQEIF
NPNDTGKRKEVAFGDIKYRIHDKVLQLVNQPEKNVFNGDIGEIVSIIYAKENTEKQDMIV
VEFDQTEVTYYRQEFTQITHAYCCSIHKAQGSEFPIVIMPVVKSYYRMLRRDLLYTAVTR
SSQFLIICGEEEAFRAGVERINEHTRNTTLYDRLVSEDVLLDETSSLKVLTMTNVEEIDP
MIGMEGITPEQFASA
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacaaggctctttattagaacagccagaagaattatttattaaagggactatt
ttatccacgatcttccataatgctgataacttgttttctgtcgttcgtttgctagtaaaa
gatacgaacacgaattgggatgaacgggacatcgtcgttaccggttatttcccagcctta
catgaagaagaagtatatctgttttacggaaaaatgaaggagcacccgaaattcgggcag
cagtttcatgccgagcgttttcaaaaagaaatgccgcaatcacgggaaggcgtcatcagc
tacttatctggagagctatttaagggtatcggcaaggttattgcggaaaacatcgttgat
acacttggaaaagacgcgatcagtaggatcttagcggatccctcgctgctggataatgtc
ccgaaactaccagaagcaaaagcgctgacattgatcgatacacttcgggaaaatcaaggt
ctggaacatgtcatggtcaaactcaatgaatatgggtttggacctcagctatccatgcgt
atctatcaagcttataaacaagatgcgatcgaggtgatcgaaaaaaatccttaccggttg
attgaagatgttcgtgggatcggatttcagcgtgccgatgaactggggcgtaagctcggt
ttaagtggtgcgcatcctgatcgtattcgcgcaggtttgctttatacaatggatcagatc
agtatgcaacaagggcatgtctatatggaagaagagccgcttatccaagaagtgatccat
ttgctccaagaaagtgaaccggtaacgatctcgcatgaggaagtagcaaaggaactgctt
gtcttagcagaggaacaaaaattgataagggaaaacacacggatctatctaccttctctc
tattttgcggaaagcggttttgcctaccatgtgaagcgaatgatgaaacaaacggaatat
gcagagcagtttccagaatcagaatttttgttagcgctcggagaactagaggagcgcttg
caggtttcctttggagaaacgcagaaagaagcgatcaaacaagcgctgatgtcaccgatg
ctggcacttacaggtggtccgggtacggggaaaacaacggttatcaaagggatcgtcgaa
ctatttgcggaactccatggccttagcttagatccgcatgcctataaagatggcgcggct
tttcctatcctgcttgcagccccaactggcagagcggctaaacgaatgtcggaatcgact
ggacttccggcgatgacgatccaccgtttgcttggcatgaatgggcaagagaacttggat
gatgaatcggaacgctctatcgatggacgcttgcttatcgtggacgaaatgtcgatggtc
gatgtgtggctggcgaaccagctctttcgcgcacttcctgcgcatatgcaagttatcttg
gtaggcgatcaggatcaattgccgtcagtcggtccaggtcaagtgctgaaagatatcctt
gaatcgaaacagctcccaacagtggaactgactgatatttaccgccaaaaggatggctct
tcgatcattgaaatggcgcatgcaatcaaagagggacaattacctccggattttacgaaa
aacagcgcagaccgctctttctttcattgccaagttggtcaaatcagtgacgtcgtagaa
caagtggtcaaaaatgccaaagcaaagggattccgggcgaaggacattcaagttctggca
ccgatgtaccgcggtccagccgggatcgatattttgaatcgccaactgcaggaaattttt
aatccaaatgatacgggtaagcgtaaagaagttgctttcggcgatatcaaatatcggata
catgataaagtgcttcaacttgtcaatcagccggaaaagaatgtttttaatggtgatatc
ggcgaaatcgtctcgattatttatgcaaaagaaaatacagaaaaacaagatatgatcgtt
gtggaattcgatcagaccgaagtgacgtattatcggcaggaattcacgcagatcacgcat
gcgtattgttgttcgatccataaagcgcaagggagtgaattcccgatcgtcatcatgccg
gtcgtgaaaagctattaccggatgctacgacgcgacctcttgtatacagccgttacaaga
agtagtcagtttttgattatatgcggcgaagaagaagcttttcgagctggtgtcgaacga
atcaatgagcatacacgcaataccacgttatatgacagacttgtgagcgaagatgtgttg
ctcgatgaaacaagcagtttgaaagtcctgaccatgacaaatgtggaagaaatcgatccg
atgatcggaatggaaggaataacgccggagcaattcgcgagcgcatga
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