Listeria grayi: NCTC10812_02554
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Entry
NCTC10812_02554 CDS
T06340
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lgz
Listeria grayi
Pathway
lgz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10812_02554 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgz03021
]
NCTC10812_02554 (rho)
03019 Messenger RNA biogenesis [BR:
lgz03019
]
NCTC10812_02554 (rho)
Transcription machinery [BR:
lgz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC10812_02554 (rho)
Messenger RNA biogenesis [BR:
lgz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC10812_02554 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
ATPase_2
OB_RNB
AAA
NACHT
AAA_22
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
VEI36441
LinkDB
All DBs
Position
1:complement(2524299..2525570)
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AA seq
423 aa
AA seq
DB search
MAKMTISYLEDLTIKEIYALAKEHKISYYSKLSKKELIFAILKSNAEKEGFFFMEGVLDI
IPSEGFGFLRPINYSSSSEDIYISASQIRRFDLRTGDKVSGKARPPKENERYFGLLQVEA
VNGEDPEVAKERVHFPGLTPLYPDRQIKLETGKFPLSTRTIDMIAPIGFGQRGLIVAPPK
AGKTILLKEIANSITKNHPEAELIMLLIDERPEEVTDIERSVEADVASSTFDELPENHIK
VAELVLERAMRLVEQKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNMELHLDRALAERRIFPAIDMR
RSGTRKEELLLSQDNLEQLWKIRKVLPLQGDGLDISERFIRYMKKTETNTDFYELLQQEM
FKK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaatgacgatctcttatttagaggacttaacgatcaaagaaatttatgccttg
gcgaaagaacataaaatcagctactatagcaaactatcgaaaaaagaacttatttttgcg
attctaaaatcaaatgcggaaaaagaaggcttcttttttatggaaggcgtacttgatatt
attccttccgaggggtttggctttttaagaccaatcaattattcttccagcagtgaagat
atatacatatctgcttcccagattcgccggtttgatttgcggacaggggacaaagtttcc
ggaaaggctagaccgccgaaagaaaatgaacgttattttggtttgctgcaagtagaagca
gtaaatggagaagatccggaagtagcgaaagagcgtgtccatttccctggattgacacct
ctttatccagatcggcaaataaaattggaaaccgggaaatttccgctttcaacgaggacg
atcgatatgatcgcgccaatcggctttggtcagcgaggtttgatcgttgcaccacctaaa
gcgggtaagacgatcttgctcaaggaaatcgccaatagtatcacaaaaaatcatcctgag
gccgaactgatcatgctattgatcgacgagcggccagaggaagtaacggatatcgagcgt
tctgtagaagcggatgtcgccagctctacatttgacgagctacctgaaaatcatatcaaa
gtggcggagctcgttcttgagagagcgatgcgccttgtggagcagaaacgcgatgtcatt
attctgatggacagtatcacgcgccttgcccgtgcctacaacttagttattccgcctagc
ggtagaacgttgtcaggcgggatcgatccggcggcatttcaccgtccgaaacgctttttc
ggagcagcccgaaatatcgaagaaggtggtagtttgacgattttagctactgctctgatc
gataccggctcgcgaatggacgatgtcatctatgaagaatttaaaggaaccggcaacatg
gaactgcatctcgaccgtgcccttgccgaacgaaggattttcccggcgatcgatatgcgc
agatccggaacaagaaaagaagaattgctattatctcaagacaatttagaacaattgtgg
aaaatacgaaaagtcctgccgctgcaaggagacgggcttgatatctcggaacgttttatc
cgctatatgaaaaaaacggaaacaaacacagatttttacgagcttctgcagcaggaaatg
tttaaaaaataa
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