Lactobacillus helveticus KLDS1.8701: HUO_02305
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Entry
HUO_02305 CDS
T03777
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhd
Lactobacillus helveticus KLDS1.8701
Pathway
lhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUO_02305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhd03019
]
HUO_02305
03009 Ribosome biogenesis [BR:
lhd03009
]
HUO_02305
Enzymes [BR:
lhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUO_02305
Messenger RNA biogenesis [BR:
lhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUO_02305
Ribosome biogenesis [BR:
lhd03009
]
Prokaryotic type
rRNA helicases
HUO_02305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GAS
Motif
Other DBs
NCBI-ProteinID:
AJY60868
UniProt:
A0AAV4E736
LinkDB
All DBs
Position
454459..455970
Genome browser
AA seq
503 aa
AA seq
DB search
MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL
QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSL
KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK
QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLID
VQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVA
TDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRTIE
QLTKKKMSPISLPTDDQALRGQLKQAKAEIEDLMKGDLGKYTQDASELLDNYSALDLVAA
FLKNLAKDSTDIKVKITPEKPLSYKGDGRHGRGRRGHNNHGRGSGHGNYHRRRNSNNDYR
HNGNRGRRGRGNGHEFAIKNKKD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagaattaggattaaacgatgcgcttcttaaagcgattaaacgctcaggt
tttgaagaggcaaccccaatccaagagcaaactattccacttgctttgcaaggaaaagat
gtaattggacaagcacaaactggtactggtaagacagcagcatttggtttgccaattttg
caatctattgataaaaaagaaaaggcaatccaagcaattattcaagcaattattatcgaa
ccaacgcgtgagcttgctattcaaacacaggaagaattattccgcttgggtcgtgatgaa
catgcccatgtacaagtggtttacggtggagcagatattggccgccagattcgttcatta
aagcagcatgcaccatcaattttagttggtacgccaggtcgattattagatcacttaaag
cgtggcacaattgatttagataaagttaatacagtagttttggacgaagcagatgaaatg
ctcgacatgggctttatcaaagatatcgaaagcattttgaagtatgctaaaaactgtaag
caaactttgcttttcagtgctactatgcctaagccaattttacgaattggtgaaaagttc
atgaaggatcctgctattgttcaaattaaggctaaggaattaacagctgacttaattgat
caatattttgttcgtgccaaagaatccgaaaaatttgacattatgtgtcgtttgattgat
gttcaaggcccagacttggcacttgtattcgggcggactaaacgccgcgtagatgagctt
acacgcggattgcaggcacgtggctataatgctgcaggtattcacggagacttgtctcaa
gcacggcgtatggcagtcttgaagcgattccgtgagggtaagttggatattttagttgct
actgatgtggcagcacgtggtttggatatttcaggagtgactcacgtatataattatgat
attcctcaagatccggattcttatgttcaccgtattggtagaactggtcgtgcgggacaa
aatggtgtttcagtaaccttcgtaactccaaacgaaattggctacatgagaactattgaa
caacttactaagaaaaagatgtcaccaattagtctaccaacagatgatcaagctcttcgt
ggtcaattaaagcaagctaaggctgaaatcgaagacttaatgaaaggcgacttgggtaag
tatactcaagatgctagtgagcttcttgataattactcagctcttgatttggtagctgcc
ttccttaagaatttggctaaggattcaacggatatcaaggttaaaattacgccagaaaag
cctttgtcatataagggtgatggtcgtcatggacgtggacgccgtggacataataatcat
ggtcgtggtagcggacatggaaattatcatcgtcgccgcaatagtaataacgattaccgt
cataatggtaatcgtgggcgtcgtggacgtggcaacggacatgaattcgcaatcaagaat
aaaaaagattaa
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