Lactobacillus helveticus KLDS1.8701: HUO_03120
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Entry
HUO_03120 CDS
T03777
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lhd
Lactobacillus helveticus KLDS1.8701
Brite
KEGG Orthology (KO) [BR:
lhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhd03019
]
HUO_03120
03009 Ribosome biogenesis [BR:
lhd03009
]
HUO_03120
Enzymes [BR:
lhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUO_03120
Messenger RNA biogenesis [BR:
lhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUO_03120
Ribosome biogenesis [BR:
lhd03009
]
Prokaryotic type
rRNA helicases
HUO_03120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AJY61006
LinkDB
All DBs
Position
603516..604877
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AA seq
453 aa
AA seq
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MNNIFADSRIRPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLRVVVQAATGSGKTHAYLVP
IFNEIDEDAHYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGGTDRERQLEKY
QNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKMTKDV
QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTIKNDLLDIGSKNRKSVLYKLLT
MGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVA
SDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLICEEEMNRIEDLE
KMGVHFDFVEIKNGELVPRKHYRSRENRQGKNHKFDTKLVGYVKKEKRKRKPGYKKKIKR
AIQEDNRQKRKLEQRHEIRKAKRLRKRKREQGR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaataatattttcgcagattccagaattagaccagctattcaagagggtttaaagaag
atccattttgaaaagccaactaaggtgcaggaaaaagttattccagcaatgctttctgat
ttaagggttgtggtgcaagctgcaaccgggtcaggtaagacgcatgcttatttggtgcct
atctttaatgaaattgatgaagatgctcactatgtgcaagcaattgtgactttgcctagt
cgagagcttgctgatcaactttatcaagtagcacgtcaattaagagatgcggcagggatg
cacttttctattgcccaccttgctggtggaacggaccgtgaacgtcagttagaaaagtac
caaaataatacgccacagttggtaattgccactccgggacgacttttggactttgtacaa
aaaaaggtattcgttgttgatcaagttaagacttttgtcatcgacgaagctgatatgact
cttgacatgggctttttggctgatattgatcaagtagcaagcaagatgactaaggatgta
caaattgcggccttttcagctactattccagttaagctatctaactttttgcgtaagtac
atggctcatccagatcaaatcgtgatcgataatccgagtgtcattgcacctacaattaag
aatgatttgcttgatattggctcaaagaatcgtaagagtgttttgtacaagttattgact
atgggtcaaccttacttggctttggtttttgctaatacaaaacaaactgttgatgaatta
actagatacttgcaagatcaaggcttaaaggtagctaagattcatggtggggtaactgag
cgagaaagaaagcggactttgcgtcaagttgagcaaggacaatttcaatatgttgttgcc
tctgacttagcagcccgtggtcttgatatcgatggtgttagtttagttattaattatgaa
attccacgtgatatcgaatttgtaattcaccggattggtcgtaccggccgtaatggttta
tcaggtcatgcgattactttaatttgtgaagaagaaatgaaccggatcgaagatttggaa
aagatgggcgttcatttcgactttgttgaaattaagaatggtgaattagtaccacgtaag
cattaccgcagtcgtgagaatcgtcagggtaagaatcacaagtttgatactaagttagta
ggttacgttaaaaaggaaaaacgtaagcgtaagcctggctacaagaagaagattaagcga
gcaattcaagaagataatcgtcaaaagcgtaagcttgaacaacgtcatgaaattagaaaa
gctaagcgtttgagaaagcgtaagcgtgaacaaggacgttaa
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