Lactobacillus helveticus KLDS1.8701: HUO_05460
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Entry
HUO_05460 CDS
T03777
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lhd
Lactobacillus helveticus KLDS1.8701
Pathway
lhd03410
Base excision repair
lhd03430
Mismatch repair
lhd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HUO_05460
03430 Mismatch repair
HUO_05460
03440 Homologous recombination
HUO_05460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhd03400
]
HUO_05460
DNA repair and recombination proteins [BR:
lhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HUO_05460
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HUO_05460
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUO_05460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
ssDNA-exonuc_C
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AJY61350
LinkDB
All DBs
Position
1053951..1056224
Genome browser
AA seq
757 aa
AA seq
DB search
MKWQQRTAEELAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMHDM
DKAVDRINQAINNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYGPN
LDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVHCN
YPGQEYPFDDYCGAGVAYTICRELMQDPVPELLDLAMIGTIGDMVKVTGEGHIIVKRGLD
VLNQTERPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANANLAVELLLSDDDLE
AQKIADQIEDLNNKRKELTTEVYDRCMELVRENSWQKQNTLVLYDPDFHEGVLGLVANKI
VEKLHKPTIVLTKNDEGEIKGSGRSFSGFNLFDALNPLKESLLTKFGGHDFACGLSMEED
KVNDLRKKFEADFHVDGGLETKEYDMELPMHDLSPQTLAQINQVGPFGTGDPQPIFSISD
PTITHFFKIGKDKNHVKLTANKKDGNLAIVGFNKDYLNNNLLPFISKIFVTLSLNTYRKQ
VSLQGIMEGIAFASPKLAVPTSVIDLRQEKFVMGLADRYLLFDKKNIPIVKNSLQIDDDK
ISLVKDYDQSGETVALLDVPRNQVELNAALKKDYQQIYLCFLLDQLPVEQIPAKSYFGKV
LKYIYAHPALKPEDYRTVAPYLGLDYDSVLFILRVFFELGFVKLDDQKLVGESNPKKQPL
TASKYLMATSSQIKFINQLRTMPTQKLITYVNNLVKR
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaagtggcaacaaagaacagctgaagaattggcgccagatctagtagaaaagtatcag
cttagtccaatttccgcacggctttttgcattacgtggtatcaatactgatgaaaaatta
gatttttggtttaatgcgaccgaagaaaacttaactgatccatccttaatgcatgatatg
gataaagctgtcgataggattaatcaagcgatcaataatggtgaaaaaattactatttat
ggtgattatgatgctgatgggattactgctactacaattatgactgaagcattaagcatt
ttgggtgcggatgttcattactttataccagatcgctttaaagacggatatggccctaat
cttgatcgctacaaggatatagtagctgatggcacaaagttaattattaccgtagataat
ggtgtaacggggattgaagaagttgaatacgctaaagaacatggcgttgatactattatt
acggatcaccatacttttcaagaaaataagccagatgcttatgcaattgttcactgtaat
tatcctggtcaagaatatccttttgatgattattgtggtgcaggtgtagcttatacaatt
tgtcgtgagcttatgcaggatcctgtaccagaattgctagatttagcaatgatcggtact
attggtgacatggttaaagttactggtgaaggccatattattgtaaaacgtgggttagat
gttcttaatcaaaccgaacgaccgggcttaagagcgcttatcaaaaatgccggtttaacg
ctagaaacgattaatgagacagatgtaggctttaatattgctcctagacttaatgctgtt
ggacgtttggctaatgctaatctggcagtagagcttttgcttagtgatgatgatcttgag
gcacagaagatcgcagatcagattgaagacttaaataataagcgtaaagagctaactact
gaggtttacgatcgctgcatggaattagttcgtgaaaatagttggcaaaagcaaaatact
ttagttttatatgatcctgattttcatgaaggagttttggggcttgttgctaacaagata
gtggaaaaactgcataaaccaacaattgttttaactaaaaacgatgaaggggagattaag
ggatcaggtcgttcattcagtggttttaacttatttgatgctcttaatccgttaaaagaa
agtctattgaccaaatttggaggtcatgattttgcttgtggtttatccatggaagaagac
aaagtaaatgacctacggaaaaagtttgaagccgattttcatgttgacggtggtttagag
actaaagagtacgatatggaattgcctatgcatgacttatcacctcaaactttggctcaa
attaatcaagtgggaccatttggtactggtgatccgcagccaatttttagtatttcggat
ccaactattacacactttttcaaaataggaaaagataagaatcatgttaaattaacagct
aataaaaaagacggcaatttagcaattgtgggatttaataaggattatttgaataataat
ttgttaccgtttatttcaaaaatctttgttactctctctttgaatacttatcgcaaacaa
gtatctttgcaaggcatcatggaaggaatagcctttgcatccccaaaattagctgtgcca
acatcagtaattgatttaagacaagagaaatttgtcatgggccttgcagatcgttatttg
ctttttgacaaaaagaatattccaattgttaagaatagccttcaaattgatgatgataaa
attagcttggttaaagattatgatcaatcgggtgaaacagtagctttgcttgatgtgcct
cgcaatcaagtggaattaaatgcagctttaaaaaaagattatcaacaaatttatttatgc
tttttattagatcagttacctgttgaacaaattccagcaaagagttatttcggaaaagtg
ttaaagtatatttatgcccatccagcattaaagcctgaagactatcgcactgtagcacca
tatctaggtttggattatgatagtgtattgtttattttgcgagtattctttgaattaggt
tttgttaaattagacgatcaaaaattagttggtgagtctaatccaaagaagcaaccattg
acagcttctaaatatttaatggcaacgagttcacaaattaaatttattaatcaactaaga
acaatgcctactcaaaaattaattacatatgttaataatttggtaaaaagatag
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