Lactobacillus helveticus KLDS1.8701: HUO_06735
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Entry
HUO_06735 CDS
T03777
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lhd
Lactobacillus helveticus KLDS1.8701
Pathway
lhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUO_06735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhd03019
]
HUO_06735
03400 DNA repair and recombination proteins [BR:
lhd03400
]
HUO_06735
Enzymes [BR:
lhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUO_06735
Messenger RNA biogenesis [BR:
lhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUO_06735
DNA repair and recombination proteins [BR:
lhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HUO_06735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
SecA_DEAD
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AJY62215
UniProt:
A0AAU8XUE0
LinkDB
All DBs
Position
complement(1296516..1298288)
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AA seq
590 aa
AA seq
DB search
MNPEKILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPALMNEGVTLV
ISPLISLMKDQIDSLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPERLAMDY
FRYQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFEGINSLKSKPTILALTATATPAVQ
DDIGQQLNIPQENFIITSFARPNISFKVVNSPQNTQLYIAQYIKAHPDDAGIIYTNTRKK
VESLTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGMGIDKSNVRFV
VHASSARNIESYYQEAGRAGRDGEESEAVMIYHPGDLHQYRYFIEESDADQKYKELQYQK
LQAITDYVNTGECLQQFIVRYFGQDCPPCGKCSNCLNQGDLKDITTDAQKVIALVYELDG
RFGKNIVAQCLVGSTSQRMQEIHADQYEHFNSLKISQKEAVSLIDYLIASGYLKIEGIKY
PLVHVTNRGWDVLDGKATVKRRISKIQKRKQSFAQDADTNLFKALREKRKELAKKQRVPA
FMIFSDRSLHDMTKIKPQNENDFLEVSGVGQAKLKKYGQIMLKVIEKFTN
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagaaaaaattttaaagcaaacttttggctattctagttttcgtccaggtcaa
aagaaagtaattgatttaattttaaatagaaaaaacgttttagctgttatgccaacaggt
gcaggtaaatctctctgttatcaggttccggctttaatgaatgaaggcgtgacgttagtc
atttcacctttgatatcgttaatgaaagatcaaattgattcgctaaagcaaaatggtatt
aacgcagcggcgttaaactcaaccactccgcaagaagaagtaaatcctattttacgacaa
gcatatgaaggtaaaatcaagttgatctatatcacgcctgagcgtttagcaatggactat
tttagatatcagcttaattttttagatgtcgatttggttgcagtggacgaagcacactgt
atttcgcagtggggacatgattttcgtccagcgtatagacaaatttttgaaggaattaat
tctcttaagagcaaacctaccatcttagcattaacggcaactgctacaccggcagttcaa
gatgatattgggcagcaattaaatattccacaagagaacttcattattacttcatttgca
cgcccaaatataagctttaaggtggttaactctccgcaaaatacccagctttatattgca
caatatattaaggcccatccagatgatgccggaattatttatacgaatacccgtaagaaa
gttgaatctttaactgactatcttgctaaaaaaggtatttcagtaggtgcttatcatgga
ggaatggatgcaaaagaaagatcacaaatccaagaagcattccaattcgatgaatttcaa
gtgattgtagcaacgaacgcttttggcatgggaattgataaaagcaatgtccgttttgta
gttcatgcatcgagtgctcgtaatattgaaagctattatcaagaagctggtcgtgccggt
cgtgatggtgaagaaagtgaagcggtgatgatttaccatccaggagatcttcaccagtat
cgctactttattgaagaatcggatgcagatcaaaaatataaggaattgcaatatcaaaaa
ttgcaggcgattactgattatgtaaacactggtgaatgcttgcagcaatttatagtgcgc
tattttggtcaggactgtccgccttgtggtaaatgttcaaattgtcttaatcaaggtgat
ttaaaagatataactactgatgcacagaaggttatcgcgctggtctatgaacttgatggc
cgttttggtaaaaatattgtagcgcaatgtctagtgggttcgactagtcagcgaatgcag
gaaatacatgcagaccaatatgaacattttaatagtttaaaaatcagccagaaggaagcc
gtaagcttgattgactatttaattgcttctggttacttgaaaattgaagggattaaatac
cctttagttcacgtaaccaatcggggatgggatgtcctagatggaaaagccacagtaaaa
agaagaattagtaaaattcaaaagagaaagcaaagttttgcccaagatgcagatactaat
ttattcaaagctttaagggaaaagcgcaaagaactggctaagaagcaaagagttcctgcc
tttatgattttttctgatcgtagtttgcatgatatgactaaaattaagccgcaaaatgaa
aatgatttcttagaagtaagtggcgtgggacaagctaaattgaaaaagtacggtcaaatc
atgcttaaagtaattgaaaaatttacaaattaa
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