Lactobacillus helveticus DPC 4571: lhv_0291
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Entry
lhv_0291 CDS
T00625
Name
(GenBank) transcriptional repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lhe
Lactobacillus helveticus DPC 4571
Pathway
lhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lhv_0291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhe03400
]
lhv_0291
Enzymes [BR:
lhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lhv_0291
DNA repair and recombination proteins [BR:
lhe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lhv_0291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_30
SLFN-g3_helicase
Y_Y_Y
MFD_D3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABX26518
UniProt:
A8YXI7
LinkDB
All DBs
Position
294957..298454
Genome browser
AA seq
1165 aa
AA seq
DB search
MRLTEILKEDQDLNNFIAKTKQVKNSLITGANAGAFSLLLKQIVTELKTPLILVEENENK
AQNLYGELSAILPDGSVQIFPVDATIATQTAVSSPDELSNRIEALNFLLSKKSGIVVTTP
QGLQYKLSDPQEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILD
VYPLDRENPVRIEFFGDEIDTIKEFDLATQRSQEEIDHVEISAAQDRVFSVEAIKTAAEA
IEQDMGDAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKKPSSLLEYLDKNGQIL
IDDLPLVKQAVETVDKQNTAFISDELKTGAMLPKQTLRNDFDQVLTKDKHYRIYFSLFQR
SMGRIRLGQMFNWQTREPAQFFSQMPLIKSELESYQKSGQTVVLQADNAKRAKQIDQTMV
DFGLNLPIVGEDEITEGKSQIVVAGYTSGFSLPSVKLVYLTERELFNKRPQRKKRIKTLE
NAQRLRNYTELKPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGDQLFVPADQL
SLVQKYVASEGKTPHINKLGGSEWAKIKRKVQSKVEDIADDLIELYAKRESEKGFAFSPD
DDLQKQFEDAFPYAETPDQLRSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAI
QDNKQVAFLAPTTILAQQHYETIQDRFKDFPVNTAMLSRFQTLAESKEIIEGLKEGKIDL
VVGTHRLLSKDVEFKDLGLLIVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMS
MVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDGQVFYLHNRISDIDETV
EKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIE
DADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIA
MRDLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIKERKGKKTVKKSNAEIDLKLEAY
IPDSYIGDQEEKIEFYKKIKAVNNQEELDKIEDELIDRFGDYPAAVENLLAVAGLKVDTD
LAQVLNVLKKDNNTIKVEFNNAASHELEGPNIFRALEHVSLKARISMNQEKRMVILLQLP
DKMKNRVLFNELTTFLQAASEIVQR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttaacagaaatattaaaagaagatcaagacttaaataattttattgcaaaaact
aaacaagtaaagaattcactaatcactggcgctaatgccggtgcttttagtctactttta
aaacaaatcgtaactgagttaaaaactccacttattttagtagaggaaaatgaaaataaa
gcacaaaatttatatggagagttaagtgcaattttgcctgatggcagtgtccaaatcttt
cctgtcgatgccactatcgctacgcaaactgcagttagttcaccagatgagttaagcaat
cgaattgaagccctcaattttttattaagcaaaaaatctgggatcgtagttacgactccg
caaggtttgcagtataagctatcagatccgcaagagtttgctcaggcaaaaaaagacttt
gaacctggtaaggaatatgaattaactgatctgaataaatggcttgtcagtttaggctat
aaaaaagaagctttagtagcgcgtcctggagaattcgctattcgtggcgatattttggat
gtatatcctttagatagagaaaatcctgtaagaattgaattctttggcgatgaaattgat
acgattaaggaatttgatttggcaactcagcgcagtcaagaagaaattgatcatgttgaa
atttctgcagctcaagatcgggtattttccgttgaagctattaaaactgcggcagaagcg
atagaacaagatatgggggatgcacctgcaccagacaaggcagtcaaagaccattttacg
attgcacttgatgcattgaatgcagggggactgcctgataattatgcctttttggtagat
tatttaattaaaaagccaagcagcttattagaatatttagataaaaatggtcaaatctta
attgatgatttgcccttggttaaacaagcagtagagactgtagataagcaaaatactgcg
tttattagcgatgaactaaaaactggtgcgatgttgcctaagcaaacattgcgcaatgat
tttgatcaagtattaactaaagacaaacattatagaatatatttctctcttttccagcgc
agtatgggccgaattcgtttaggtcaaatgttcaattggcaaacgcgtgaaccagcgcag
ttcttcagccagatgcccctaattaaatccgaacttgaatcatatcaaaaatctggtcaa
acggttgtattgcaagctgataatgcaaaaagagcaaagcaaatcgaccagacaatggtt
gattttggcttaaatttgccaattgtaggcgaggatgaaattacagaaggcaaatcacaa
attgtagtagctggttatactagtggctttagcttaccttcagtaaaattagtttatttg
actgagcgtgaattatttaacaagcgcccacaacgtaaaaagagaatcaaaactttagaa
aatgcgcaaaggttacgtaattatactgagctaaaacctggagattatgttgttcatgtt
aatcatggtattggtcgctttgaaggaattaaaacgctagagaataatggcgtaaaacga
gactatattaccattacttatcaacatggcgatcaattatttgtgccagcagatcagttg
agtttggtgcagaagtatgtggcttccgaaggaaagacgccacatattaataagcttggc
ggcagtgaatgggctaagattaagcgcaaggttcaatctaaggttgaagatattgctgat
gatttgattgaactttatgctaagcgtgagtcggaaaagggctttgccttttcaccagat
gatgatctgcaaaaacaatttgaagacgcctttccgtatgcggaaactccggatcaattg
cgctcaattaaagaaatcaaagaagatatggaaaaaccgaagccaatggatcgtcttgtt
gtaggggatgttggctttggtaaaacggaagttgccttaagagcggctttcaaagcaatc
caagataataaacaagttgcttttttagcaccaacaaccattttggctcagcagcactat
gaaactattcaagatcgtttcaaagacttcccagttaatactgccatgctttctcgtttc
caaactctcgctgaatccaaagagatcattgaaggtcttaaagagggcaagatcgattta
gttgtaggtactcatagacttttgtccaaagacgttgagtttaaagatctgggattatta
atcgttgatgaggagcagcgctttggcgttaaacacaaagaacgattaaagcagttaaag
gctaatatcgatgtcttaacactcactgctacgccaattcctagaaccttgcatatgtca
atggttggtgtgcgcgatttatctgtgatggaaacgccacctcaaaacagatacccaatc
caaacttatgtgatggaacaaattccaagtgtagtaagggatgcatgtttacgcgaaatg
cagcgtgatggacaggtcttttatttacataaccgaattagcgatattgatgaaacggtg
gaaaaattgcaacaactgattcctaatgcgcgtattgctagtgctcatgggagaatgagt
caaaatcaattagaggatattttatatcgctttttgaatcgagaatttgatatcttggtt
accaccacgattattgaaacgggaattgatatgccaaatgtcaatacgatgattatcgaa
gatgctgatcattacggtttgagtcagctttatcagcttcgaggcagaattggccgtagt
gccagactagcttacgcatattttttgtatcaacctaacaaggtgttaactgaagttggt
gaaaagcggctagatgcaatccgtgattttactgaattaggttcaggttttaagattgct
atgcgtgatttatcgattagaggagccggcaatatgctcggagcccaacagcatggcttt
attgatagtgttggttatgatttgtattcacaaatgctgagtgatgcaattaaagaacgt
aagggcaagaagacagttaagaaatcaaatgccgaaattgatttaaagcttgaagcttat
attccagattcatatattggcgaccaagaagaaaagattgaattttacaaaaagattaaa
gcggtcaataatcaggaagaattagataaaattgaagatgaactaattgatcgttttgga
gattatcctgcagccgttgagaacttgctcgctgtagctggattaaaagtagatacagat
ttggctcaagtcttaaatgtactgaagaaagacaataatactattaaggttgaatttaat
aatgctgcatcacatgaactagaaggccccaatatttttagagccttagagcatgtgagt
cttaaagcacgtattagtatgaatcaagaaaaaagaatggttattttattgcagctgcct
gataaaatgaagaatcgagttttatttaatgaattaactacattcttgcaagctgctagt
gaaatagtacaaagatag
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