Leptotrichia hofstadii: JCM16775_0814
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Entry
JCM16775_0814 CDS
T06149
Symbol
polC
Name
(GenBank) DNA polymerase III subunit alpha
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lhf
Leptotrichia hofstadii
Pathway
lhf03030
DNA replication
lhf03430
Mismatch repair
lhf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCM16775_0814 (polC)
03430 Mismatch repair
JCM16775_0814 (polC)
03440 Homologous recombination
JCM16775_0814 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhf03032
]
JCM16775_0814 (polC)
03400 DNA repair and recombination proteins [BR:
lhf03400
]
JCM16775_0814 (polC)
Enzymes [BR:
lhf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JCM16775_0814 (polC)
DNA replication proteins [BR:
lhf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JCM16775_0814 (polC)
DNA repair and recombination proteins [BR:
lhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JCM16775_0814 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
HHH_6
RNase_H_2
Rv2179c-like
tRNA_anti-codon
DNA_pol_A_exo1
HHH_3
DUF1980_C
DEDDh_C
DNA_pol3_a_NI
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
BBM38106
UniProt:
A0A510JG28
LinkDB
All DBs
Position
complement(825958..830355)
Genome browser
AA seq
1465 aa
AA seq
DB search
MSTKYLKVKPSEDFFRKYGIRNFEIEYVNLFSRKKEMEIFIKVSSLVAHSEIQDLRQLLY
KSFENGLKLKIKMDVNPELIQKDVVGFVKFAIENYKHESKRYQYIFASYEVESLENTVFI
KLPSHHLIEEAKRTEAKEELTRKIYECMDNSIKIEFVNGDFEEVKAKIKAQNELNSVKAS
ELPKYENSSASNGNGGNYGGNGNFNNGNNGNGYSNGGNANGGNNKGNYKWKKIPDIDAMP
FSTLDILNNGDDVALEGKIFNVDMKETKNGKLMCDFMITDYTDSVSCRIFFNTNEDIQVK
LGEWVKVTGSFEADMYSGEKYVRTQRVEAIESKDVKKKDNAPKKRIELHAHTNMSEMSGV
MSIKDYAKRAKEFGHSGIAVTDYGVVHSFPFAFKEANEDFKVIFGMEAYVVDDEQDLITN
PKDKMIEDEIYVVFDIETTGFDPFNDKIIEIGAVKMRGREIIGEFSEFVNPEIPIPPKIT
ELTTITDEMVANAEKIETVLPRFLEFCTDTTVVAHNAKFDVGFIKQKTIEQGLEYSPSVI
DTLPLARTLLPDSRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQKFLNMILSKGILK
LIEINTDLQPNIQNSETLNTMILVKNQAGLRDLYELVSRSNIEFFGMRRPRIPKTLLNSM
RENLLIASSASASERNKGELVNLYLRGAEKDDIEEKARFYDYIEIHPHTNYADMVERTSK
EIESYDIIKEMNKYFYELGKSQNKIVVATGDTHYLEEREAINRNVLLLGSGTMWKTETSE
GVRGYEFFDRKLYFKTTEEMLESFNYLGEEASQEVVVENTHKISDMIEQVRPIPTGFYPP
KIDGAEDEVREMTYKKLEELYGENIDENLKERVEKELNSIIQNGFAVLYLIAQKLVHKSV
DAGYLVGSRGSVGSSIVAYLMGITEVNGLYPHYRCPKCKHTEFMNEEGSGVDYPDKTCPE
CGTKYIKDGHAIPFEVFMGFNGDKVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTIS
TLAEKNAFGYVKKYLEEVEGTPEIKERKAEIMRIAKGCEGARKTTGQHPGGMIVVPKDKS
IYDFCPIQRPANDMKSASKTTHFDYHVMDEQLVKLDILGHDDPTTLRILQDLTGVDIYTI
PLDDKEVMSLFSGTEALGVTPDEIGSPTGTSGIPEFGTSFVKQMLVDTRPKTFAELVRIS
GLSHGTDVWLNNAQDYVRSGIATLSQIITVRDDIMNKLIDDGLDKSLAFSIMEFVRKGQP
TKNREKWQEYSKTMKEHGVEQWYIDSCEKIKYMFPKGHAVAYVMMAVRIAYFKVHYPIEF
YTAFLNRKVGDFKMTAMFRPVEELKRAKMEMDRKGNLNAKEKQELFLYEILIEMHYRKIE
LEQIDIYKSEAKLFTIQDGKIRMPLIAMDGLGEAVAENIVSERKVDFLSIEDLVKRTKLN
KTIVELMKEYGCLKDLSATNQQTLF
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgaagtatttgaaggttaagccatcggaggatttctttaggaaatatgggatt
agaaattttgagattgagtatgttaatctgttttctaggaaaaaagagatggagatattt
ataaaggtaagcagtctggttgcacatagtgagatacaggacttgaggcagctgctttat
aagagttttgagaatgggttgaaattgaagattaagatggatgttaatcctgagctgata
cagaaggatgttgttgggtttgtaaaatttgcaattgagaattataaacatgagagtaag
agatatcagtatatttttgcaagttatgaagtggaaagtcttgaaaatacggtgtttata
aaattaccgtcgcaccatttgatagaagaggccaaaagaactgaggcaaaggaagaactt
acaagaaaaatttatgaatgtatggacaattcgataaaaattgagtttgtaaatggggat
tttgaggaagtgaaggctaaaattaaggctcaaaatgagttaaattcggtaaaggcaagc
gagcttccaaagtatgaaaattccagtgcaagtaatggtaatggcggtaattatggaggg
aacggaaattttaataatggaaataacggaaacggttattcaaatggtgggaatgctaat
ggaggtaacaataaaggtaattacaaatggaaaaaaattcctgatatagatgcaatgcca
ttttctacacttgatattttgaacaatggtgatgatgtagcactagaaggaaaaattttt
aatgtagatatgaaggaaactaagaatgggaagttaatgtgtgattttatgattacagat
tatacagattctgttagttgtagaatattttttaacacaaatgaggatattcaggtaaaa
cttggggagtgggtaaaggttactggaagttttgaggcggatatgtatagtggtgaaaag
tatgtgagaacgcaaagagtggaagctatagaatctaaagatgtgaaaaaaaaggacaat
gctcccaaaaaaagaatagaacttcatgcacatacgaatatgagtgaaatgagcggagtt
atgtcaatcaaggattatgcgaaaagggctaaagaatttgggcatagcgggattgctgtg
acagattacggagtagtgcattcatttccgtttgcgtttaaggaggcaaatgaggatttt
aaagttatttttgggatggaagcgtatgtagttgatgacgagcaggacttgattaccaat
cctaaggacaagatgattgaagatgaaatttatgttgtgttcgatattgaaacgacagga
tttgatccgtttaatgacaagataattgaaattggggctgtgaaaatgcgtggaagagag
attattggagaattttctgaatttgtaaatcctgaaattccaattccgccaaaaataaca
gaacttacaacaattactgatgaaatggttgcaaatgctgaaaaaatagaaactgtactt
ccaagatttctagaattttgtaccgatacaacggtagttgcccacaatgcgaaatttgac
gtgggatttatcaagcaaaaaactatagagcaaggacttgagtattctccaagcgtgatt
gatacattgcctttggctaggacattgcttcctgattcgagaggatatgggcttgctaat
ttggtaaaatattttgggattacgcttgaaactcaccatagggctgttgatgatgcgaag
gctactgcagaagtttttcagaaatttttaaatatgattttaagtaaagggattttaaaa
ctgattgaaattaatacggatttacagccgaacattcaaaattctgagacattgaacacg
atgattttggtaaaaaatcaggctgggcttcgtgacctgtacgagcttgtatcacgttcc
aacatagaattttttggaatgagaagacctagaataccaaaaactttgttaaacagcatg
agggaaaatctgttaattgcaagttcggcttcggcttctgaaagaaataagggagaactt
gtaaatctatatttacgtggggcagaaaaagacgacattgaggaaaaagcgagattttat
gattatatcgagattcatccacatacaaactatgctgacatggtggaaagaacgagcaag
gaaattgaaagttacgatataataaaggaaatgaacaagtatttttatgaacttggaaaa
agtcagaataaaattgtagttgccacaggggatacacattatcttgaagagcgtgaagca
attaacaggaatgttcttcttttgggaagtggaacgatgtggaaaactgaaacttcagaa
ggtgtgagaggatacgagttttttgatagaaaattgtattttaaaactaccgaagaaatg
ttggagtcgtttaattatctgggagaagaagcgtctcaggaagtcgttgtggaaaatacc
cataaaattagcgatatgatagaacaggtgcgtccaatcccaactggattctatccgccg
aaaattgatggggcagaagatgaagtaagggaaatgacttacaagaaacttgaggaactt
tatggggaaaatattgatgaaaacctgaaggaaagagtggaaaaggagcttaattcgatt
attcaaaatggatttgcggtgctttatctgattgcacagaaacttgtgcataaatcggta
gatgcaggttatcttgtaggttcacgtggttcggttggatcttcaatagttgcctatctt
atgggaattaccgaagtgaacggactttatccgcactacagatgtcctaaatgtaagcat
acggaatttatgaatgaagaaggaagtggagttgactatcctgacaaaacttgtccagaa
tgtggtacaaaatatataaaagatggacatgctatcccatttgaagtgtttatgggattt
aatggggataaagtgccagatattgacttgaacttttctggagaatatcaaggggagatt
cataaatatacagaagagctgtttggaagtgacaatgtctttcgtgctggaacgatttct
acgcttgctgaaaagaatgcttttgggtatgtgaaaaagtatcttgaagaagtggaagga
acgcctgaaataaaggaaagaaaagcagaaattatgagaatcgcaaaaggctgtgaaggg
gctagaaaaacaactggacagcatcccggaggaatgatagtcgttccaaaggacaagtca
atttacgatttttgtccaatccagcgtccagcaaacgatatgaaatcagcttccaagaca
acccattttgattatcacgtaatggacgaacagcttgtaaaactcgatatactgggacac
gatgatccgacaacgcttagaattttacaggatttgacaggtgttgatatttatacgatt
ccacttgatgataaggaagtaatgagtttattcagcgggacagaagcacttggtgtaact
ccagatgaaatcggctctccgacaggtacatcaggaatacctgaatttggaacatctttc
gtaaaacagatgttagttgacacacgtccaaaaacttttgcagaattagtcagaatttct
ggactttcacacggaacggacgtttggctgaataatgcacaggattacgtaagaagtgga
attgcaaccttgagtcagattatcacggtgcgggatgacattatgaataagctgattgac
gatggacttgataaatcattagccttttccataatggaatttgtaagaaaaggacagcct
acgaaaaatcgtgaaaagtggcaggaatattctaaaacaatgaaagaacacggtgtagag
caatggtatattgattcatgcgaaaaaataaaatatatgttcccaaaagggcatgcggtg
gcttatgtaatgatggcagtaagaatcgcctattttaaagtgcattatccaatcgaattt
tacacagctttcctaaatagaaaagttggagattttaaaatgacagcaatgttcagacca
gtagaagaattgaaaagggcaaaaatggaaatggacagaaaaggaaacttaaacgctaaa
gaaaagcaagaattatttctatacgaaattttgattgaaatgcactaccgtaaaatcgaa
ctggaacaaattgacatctataaatcagaagcaaaacttttcacaatacaggatggtaaa
atcagaatgccattaatcgcaatggatggactgggagaagctgttgctgaaaatattgtt
tctgaacgaaaagttgactttttatcaatcgaggatttagtaaaacgtacaaaattgaat
aagacgattgtggaactgatgaaagaatatggatgtttgaaggatttgtcagcaacaaat
caacagacattattttag
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