Leptotrichia hofstadii: JCM16775_1167
Help
Entry
JCM16775_1167 CDS
T06149
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lhf
Leptotrichia hofstadii
Pathway
lhf03410
Base excision repair
lhf03430
Mismatch repair
lhf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JCM16775_1167
03430 Mismatch repair
JCM16775_1167
03440 Homologous recombination
JCM16775_1167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhf03400
]
JCM16775_1167
DNA repair and recombination proteins [BR:
lhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JCM16775_1167
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JCM16775_1167
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM16775_1167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
GVIN1_N
Motif
Other DBs
NCBI-ProteinID:
BBM38458
UniProt:
A0A510JGP5
LinkDB
All DBs
Position
1205753..1207450
Genome browser
AA seq
565 aa
AA seq
DB search
MKWELKSYNEDYLTSKSSEFGESRLISRLLLNRGIDTKEKVSKFLNSDKKDIHNPFLFEN
MEKVVERIKKAGKNKEKIVIYGDYDVDGISGVAYLVIMLRKLGLNVDYYIPNRVHEGIGI
NKNLLNFLKKRDAKLFITVDISINNREEILMLKSSGIDIIITDHHRQIGILEDREQEKEL
DILTINPKTSSTYPNKSLSGSGVAFKLADAIYERYGANKKILYDYMDVIMIGTVADVVPM
TDENRFIIKKGLNNLKKTKIKGLKYIINYLKINPRNITTSDIGFFIAPIFNALGRIDNSK
SVVNFFIQEDDFKLFSIIEEMKRANKIRRYLENEIYNELEEKIQRLERPKYIFMKSRKWH
SGVIGVVCSRISIKYNIPVILISIKNGYGKASCRSIEGINIFDILKSVSDKLERFGGHDL
AAGFLVSEKYLGEIEKHLRQRLARKNRENVQKTLYVDAWLNIEYLNKRKLHEINRLSPFG
LDNQEPNFMDSDVSFLNLTKFGINNRHFKGFIRKNNRIISVIGYNLGHKLKANNFYKKKF
KIVYTPIFKSGHSDLFIELKIKDFK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgggaattaaaaagctataatgaagattatttgacatcaaaaagttctgaattt
ggtgaaagcagattaatttcaagactgcttttgaatcgaggaattgacacaaaggaaaaa
gtttctaaatttttaaattcagataaaaaagatattcataatccatttttatttgaaaat
atggaaaaagttgtagaaagaataaaaaaggctgggaaaaataaagaaaaaattgtaatt
tatggagattatgacgttgacggaatctctggagtggcgtatctcgtaatcatgctacga
aaattggggcttaatgttgattattatattccaaatcgggttcatgagggaataggtata
aataaaaatcttttgaattttttgaaaaaacgggacgcaaagttgtttataacagttgat
atttcaataaataaccgtgaagaaatactgatgttaaaaagcagcggaattgacataatt
ataacagatcatcatagacagattggaattctggaggatagggagcaggaaaaagaattg
gatattcttacaataaatccaaagaccagcagtacttatccaaataagtccttgtcaggc
tctggagttgcctttaaacttgcggatgctatttatgaaagatatggtgcaaataaaaaa
atattgtacgattatatggatgttataatgattggaacagttgcagatgttgtgccaatg
accgatgaaaacaggtttatcataaaaaaaggactaaataatttaaaaaaaaccaaaata
aaaggtttgaagtatattattaattatttgaagataaatcctagaaatataacaactagc
gatattggatttttcattgcgccgattttcaatgcacttggaagaattgataattcaaaa
agtgttgtaaatttctttattcaggaagatgactttaaacttttctcaataattgaagaa
atgaaacgtgcgaataaaatcaggcgttatctggaaaatgagatttataatgaactggaa
gaaaaaatacagcgtctggaacgtccaaaatatatttttatgaaaagcagaaaatggcat
tctggcgtaattggcgtagtctgttcaagaatttccatcaaatacaacataccagtaatt
ctgatttcaataaaaaatggatatggaaaggcatcgtgcagaagtatcgaaggaataaat
atttttgatattttaaaaagtgtgtcagacaaactggagcgatttggagggcatgacttg
gcggcaggatttcttgtttcagaaaaatatttaggtgaaattgaaaaacatctgcggcaa
agacttgcaagaaaaaacagggaaaatgtgcaaaaaactttgtatgttgacgcatggttg
aatattgaatatttaaacaaaagaaaactgcacgaaataaacaggctgtctccttttggg
ctggataatcaggagccaaattttatggattcagatgtaagttttcttaatctaacgaaa
tttgggataaataatcggcactttaagggatttattagaaaaaataatcgtattatttca
gtaattggatataatttaggacataaattgaaggcaaataatttttataagaaaaaattt
aaaatagtttatactccgatatttaagtctgggcattcggatttatttatcgaattgaaa
ataaaggattttaaataa
DBGET
integrated database retrieval system
