Leptotrichia hofstadii: JCM16775_2035
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Entry
JCM16775_2035 CDS
T06149
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lhf
Leptotrichia hofstadii
Pathway
lhf03410
Base excision repair
lhf03430
Mismatch repair
lhf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JCM16775_2035
03430 Mismatch repair
JCM16775_2035
03440 Homologous recombination
JCM16775_2035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhf03400
]
JCM16775_2035
DNA repair and recombination proteins [BR:
lhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JCM16775_2035
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JCM16775_2035
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM16775_2035
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BBM39324
UniProt:
A0A510JJ67
LinkDB
All DBs
Position
complement(2078051..2081041)
Genome browser
AA seq
996 aa
AA seq
DB search
MRNTKWAAKIIPNPRQEREYIERDNKQKNDEKTKKLKKSKTEKQNFENMNLSSVIDNDIL
KILYSRGITTEKEVREFLNPKLENIQNPYGLQDMEKTVLEIEKAIKEQKNIWIYGDYDVD
GITSTSILYMALKELGAENVNYYIPIRDEGYGLNNEALKKIKESGADLVITVDCGITAFP
EVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENKFSFEFLAGVGTIFMVILCLY
ERIGKKAKAYKYLDLVAIGTVADIVPLVEENRILTKFGLEQLSRSKNKGLRFLLYKLFST
QNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAKMVVKLLISDNDREIEIIVKELINKNF
ERKELQNQIVEKVEKHIEESDLKEDYVIVDYSPEYHHGVIGIAASKIVDKYYKPAIIIEV
KEDEGIAVGSCRSIGNFNILEALQSMPELFVKFGGHSGAAGFTIGIKNLELFRKKINKFA
KTKLKEEDFVKIIEIDKQIPIQKVSYEFFQIIELLKPFGFGNPMPTFRTNNVLFENIKFI
GENKNHIMFDIKQKGFFNKNAVWFNSGEYFKELNENLFYDIVYKLKTEMFQDRYYTKVYV
EDVKVSQLKDDTLSYYHSLFNTSFPMKSVFYTNIELETEKKITMKMEFDQVSLFQGRKFI
GRLDYSISNLLILLNQYYNWNFTVKMEDVKQASNHNIVNILIKRDYNFKCYDHTQIGIFK
KIKEFLIGKMEYNSQTKELLAQFFKQNKNLIIKNIFDENEKYKYKMSNFENFLLTVGIYY
KKMTDKKSQIVISSDKKPIFNNFIKSYFDINEEYSENDYPFTLFYNYKDIERLENIIKTD
FSMQNEINYEIKENSQNLEVNEEPKQLEYKKIEKIEFKNNENVENSESIVEKQQENTEKL
SEAGKQEVENRFCIIINSEDFMVKTDDLDKNNIEEIDTKIEVPENIMFLENSTKKERKNA
KNIFVEYLPIEEKIKLKKLLTDGEKIYSDYSVNEIL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatacaaaatgggctgcaaaaattattcctaatccacgacaggagagggaatat
attgaaagagacaacaagcagaaaaatgatgaaaaaacaaaaaaattgaaaaaaagtaag
actgaaaaacagaattttgaaaatatgaatttaagttcggtaattgataatgatattttg
aaaatactttattcacggggaataacgacagagaaggaagtaagggagtttttgaatcca
aaacttgaaaatatccagaatccttatggactgcaggatatggaaaagacagttttggaa
attgaaaaggcgataaaggaacagaagaatatttggatatatggagattatgatgtggat
ggaattacttcgacatctattttgtatatggcattaaaagagcttggggcggaaaatgtg
aactactacattcctattcgggatgaagggtatggactgaataatgaggctttgaagaaa
attaaagaatctggggcggatttggtaattactgtggattgtggaattacagcgtttcct
gaagtggagtttgcaaattctataaatttgccgataattattacggatcaccataattta
catggggataaagttccagacgctattacagttgtgaatccaaaacgtcctgaaaataaa
ttttcctttgagtttctagcgggagttgggactatttttatggtaattctttgtctttat
gaaagaattgggaaaaaggcaaaagcatataaatatctcgatctggtggcaattggtacg
gttgcggatattgttccgctggtggaggaaaacaggattttgactaagtttgggctggag
cagctgagccgttctaaaaataaggggcttagatttttgctgtataaattgtttagtacg
caaaattcagattttaatgaaaaaactgagtataattcgtatgatgtgggctttatcata
gcacctgtctttaatgcggctggaaggcttaaagatgcaaaaatggtggtaaaattgcta
atttctgataatgacagggaaattgagataatcgtaaaggaattgattaataagaatttt
gagcgaaaagaattgcagaatcaaatcgtcgaaaaagtggaaaaacatattgaagaaagc
gatttaaaggaagattatgtgattgtagactattcgcctgaatatcatcacggagtaatt
ggtatagcagcttctaaaattgtggataaatattacaagcctgcgattatcattgaagtg
aaggaagatgaaggaatagcagttggatcatgccgaagcattgggaactttaatattttg
gaggcgttgcagtcgatgcctgaactttttgtgaaatttgggggacattctggagcggct
ggatttacgattggaataaaaaatttggaattatttaggaaaaaaataaataaatttgca
aaaacaaaactaaaggaagaggattttgtaaaaataatagaaattgataagcaaatccca
attcaaaaggtttcctacgaatttttccaaataatagaactgttaaagccatttggattt
ggaaatccaatgccgacgttcaggacaaataacgtactttttgaaaatataaagttcatt
ggagaaaataaaaatcatataatgtttgacataaagcaaaagggattttttaataaaaat
gctgtctggtttaattctggcgagtattttaaagaactgaacgagaatttgttttacgac
attgtttataaattaaagacagaaatgtttcaagatagatattatacgaaagtgtatgtt
gaggatgtgaaagtgtcgcagttgaaggacgatactttatcttattatcattcgcttttt
aacacatctttcccgatgaagtcggtattttatacaaatattgagctggaaacggaaaag
aaaattacaatgaaaatggaatttgaccaggtttcgctttttcaaggaagaaagttcatt
ggacggcttgattacagcatttccaacttgttaatacttttaaatcagtattataactgg
aattttactgtgaaaatggaggatgtgaagcaggcttcaaatcataatattgtaaatata
ttgataaaaagagattataattttaaatgttatgatcacacgcaaattggtatttttaag
aaaataaaagaatttttgattgggaaaatggagtataattcacagactaaagaattgctg
gcacagttttttaaacaaaataaaaacttgattataaaaaatatttttgatgaaaatgaa
aaatataaatacaaaatgtcaaattttgaaaactttttactgacagttggaatttattat
aaaaaaatgactgataaaaaaagtcaaattgtaataagttcagataaaaagccaattttt
aacaattttataaaatcatattttgatataaatgaagaatattctgaaaatgactatcca
tttacattattttataattacaaagatatagaacggttggaaaatattataaaaacagat
ttttcaatgcaaaacgaaatcaattatgaaattaaggaaaacagccaaaatcttgaagtt
aatgaagagccaaaacagctggaatacaagaaaattgaaaaaatagagtttaaaaataat
gaaaatgtggaaaactccgagagtattgtggaaaaacagcaggaaaatactgaaaagtta
agtgaagctggaaaacaggaagtagagaacagattttgcataataataaattctgaagat
tttatggtaaaaacagatgatttggacaaaaataatattgaagagatagatacgaaaatt
gaagtgccagaaaatataatgtttttagaaaattcaacgaagaaggagagaaaaaatgca
aaaaatatttttgtagaatatttaccgattgaagaaaaaattaaattgaaaaagttgctt
actgatggagaaaagatttattctgattattcggttaatgagattttgtaa
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