Lactobacillus helveticus H9: LBH_0217
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Entry
LBH_0217 CDS
T03040
Name
(GenBank) DEAD box ATP-dependent RNA helicase SrmB
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhh
Lactobacillus helveticus H9
Pathway
lhh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBH_0217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhh03019
]
LBH_0217
03009 Ribosome biogenesis [BR:
lhh03009
]
LBH_0217
Enzymes [BR:
lhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBH_0217
Messenger RNA biogenesis [BR:
lhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBH_0217
Ribosome biogenesis [BR:
lhh03009
]
Prokaryotic type
rRNA helicases
LBH_0217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GAS
Motif
Other DBs
NCBI-ProteinID:
AHI11248
LinkDB
All DBs
Position
231139..232653
Genome browser
AA seq
504 aa
AA seq
DB search
MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL
QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSL
KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK
QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLID
VQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVA
TDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRTIE
QLTKKKMSPISLPTDDQALRGQLKQAKAEIEDLMKGDLGKYTQDASELLDNYSALDLVAA
FLKNLAKDSTDIKVKITPEKPLSYKGDGRHGRGRRGHNNHGRGSGHGNYHRRRNSSNNDY
RHNGNRGRRGRGNGHEFAIKNKKD
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagaattaggattaaacgatgcgcttcttaaagcgattaaacgctcaggt
tttgaagaggcaaccccaatccaagagcaaactattccacttgctttgcaaggaaaagat
gtaattggacaagcacaaactggtactggtaagacagcagcatttggtttgccaattttg
caatctattgataaaaaagaaaaggcaatccaagcaattattcaagcaattattatcgaa
ccaacgcgtgagcttgctattcaaacacaggaagaattattccgcttgggtcgtgatgaa
catgcccatgtacaagtggtttacggtggagcagatattggccgccagattcgttcatta
aagcagcatgcaccatcaattttagttggtacgccaggtcgattattagatcacttaaag
cgtggcacaattgatttagataaagttaatacagtagttttggacgaagcagatgaaatg
ctcgacatgggctttatcaaagatatcgaaagcattttgaagtatgctaaaaactgtaag
caaactttgcttttcagtgctactatgcctaagccaattttacgaattggtgaaaagttc
atgaaggatcctgctattgttcaaattaaggctaaggaattaacagctgacttaattgat
caatattttgttcgtgccaaagaatccgaaaaatttgacattatgtgtcgtttgattgat
gttcaaggcccagacttggcacttgtattcgggcggactaaacgccgcgtagatgagctt
acacgcggattgcaggcacgtggctataatgctgcaggtattcacggagacttgtctcaa
gcacggcgtatggcagtcttgaagcgattccgtgagggtaagttggatattttagttgct
actgatgtggcagcacgtggtttggatatttcaggagtgactcacgtatataattatgat
attcctcaagatccagattcttatgttcaccgtattggtagaactggtcgtgcgggacaa
aatggtgtttcagtaaccttcgtaactccaaacgaaattggctacatgagaactattgaa
caacttactaagaaaaagatgtcaccaattagtctaccaacagatgatcaagctcttcgt
ggtcaattaaagcaagctaaggctgaaatcgaagacttaatgaaaggcgacttgggtaag
tatactcaagatgctagtgagcttcttgataattactcagctcttgatttggtagctgcc
ttccttaagaatttggctaaggattcaacggatatcaaggttaaaattacgccagaaaag
cctttgtcatataagggtgatggtcgtcatggacgtggacgccgtggacataataatcat
ggtcgtggtagcggacatggaaattatcatcgtcgccgcaatagtagtaataacgattac
cgtcataatggtaatcgtgggcgtcgtggacgtggcaacggacatgaattcgcaatcaag
aataaaaaagattaa
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