Lactobacillus helveticus H9: LBH_0238
Help
Entry
LBH_0238 CDS
T03040
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lhh
Lactobacillus helveticus H9
Pathway
lhh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lhh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBH_0238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhh03021
]
LBH_0238
03400 DNA repair and recombination proteins [BR:
lhh03400
]
LBH_0238
Enzymes [BR:
lhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBH_0238
Transcription machinery [BR:
lhh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBH_0238
DNA repair and recombination proteins [BR:
lhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBH_0238
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHI11268
LinkDB
All DBs
Position
258835..262488
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI
SPRLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLK
KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDTFKNSGNKPEWMVMDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGIASNIKNAKRKIDREDDDIWDVLEDVIKERPVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS
ADAMPKKPWPQGHEHGIFITTYGKLVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGQ
DIHDKIDEVGDDLIATPFKSGFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT
IGMNDVPEIKDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA
QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGITVSAIMEGDEMIE
PLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGVTHVKIRSILTCATPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTRSYSVPYTASVAVSEG
DYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLTRQML
QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRNMEPEADVKKPDSV
YSIGDIEKQMKEKEQSK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataaatttgaaagtatgcaaattggtcttgcatcacctaacaagatc
agaagctggtcatatggtgaagttaagaagcctgaaaccatcaactaccgtactttaaaa
cctgaaaaagatggtctatttgatgaaagaatctttggaccaactaaagactggtcatgt
gcctgtggtaaatataaaggtgttagataccgcggtatcgtttgtgaccgttgtggtgtt
gaagttacctcttcaaaagtaagaagagaacgtatgggacacattgaattagctgcccct
gtaactcacatttggtacttcaaaggtatcccatcaaggatgggcttagtattggatatt
tctccaagattgcttgaagaagttatctactttgctgcatatatcgtaattgatccaggt
gatactgatcttgagcctaagcaattattgaccgaagcagaatatcgtgaacaaaaggct
aaatatggcaaccgttttgaagctaaaatgggtgctgaagctattcgcgaattgcttaaa
aaagttgaccttgacaaagaagttaaggatttgaagaaagaacttcaaactgcaactggt
caaaaacgtacacgtgctatcagacgtttggacattttggatacatttaagaactctggt
aataagcctgaatggatggttatggatgctgttccagttattccaccagatcttcgtcca
atggttcaacttgaaggtggacgtttcgctacatcagatttgaacgatttatacagacgt
gttattaaccgtaataatcgtttgaagagattgcttgatttgaacgctcctaacatcatc
gttcaaaacgaaaagcgtatgcttcaagaagctgttgatgctttaattgataacggtcgt
cgtggtcgtccagttgttggaccaggtaaccgtccacttaagtcactttcacacatgctt
aagggtaagcaaggtcgtttccgtcaaaatttgcttggtaagcgtgttgactactcaggt
cgttcagttatcgatgtttcaccaaaattgaaattctatcaatgtggtgttcctcgtcca
atggctttggaattgtttaagccgtttgtaatgcacgaattggttaaacgtggtattgct
tctaacattaagaatgctaagcgtaagattgatcgtgaagatgatgatatttgggatgta
cttgaagatgtaattaaggagcgtccagttcttttgaaccgtgcacctactcttcaccgt
ttgagtattcaagcatttgagccagttttggtaccaggcaagtcaatcagacttcaccca
ttagcttgtgaagcctacaacgccgacttcgatggtgaccagatggccatccacgtacca
ctttcagacgaagctgttgctgaatctcgtttacttatgcttgctgctcaccacatcttg
gctcctaaggatggtaagccaatcgttactccatcacaggatatcgttttgggtaactac
tggttaactcaagctgaacgtggtcgtgaaggtgaagggatgatctttagttcacctgct
gaagctactgtagcttatgaaaatggtgacattcactaccacactatcattggtatgtca
gctgatgctatgcctaagaagccatggccacaaggtcatgaacatggcattttcattact
acatacggtaagcttgtctttaaccaattattcccagatgattacttctacatcaacgaa
ccaactgaagaaaacttaaataatcctttggatgctaagtacttcttgggtgaaggtcaa
gatattcatgacaagattgatgaagttggcgatgatttaatcgctactccatttaagagt
ggtttcttatctgattctattgctactatttacaagtactacaaggttcaacgaacttca
gaatacttggatgatttgaagaagttaggttacactagttcaactacttcaggtattacc
attggtatgaatgatgttccagaaattaaagataaggatgaaaaggtagctaaggcacgt
aaacaagttgatattgtttctaagcaattcagacgtggtttaattactgaacaagaacgt
cacgatcgagtaattagtatttggaacgcatgtaaggacgaaatccaaaacgaaattgct
caaattcactcaccacgtaacccaatttcaatcatggccgactctggtgcccgtggtaac
atttcaaactttactcagttagctggtatgcgtggtttgatggctactcctaacggtggt
ttgttcgaaatccctgttacttcaaacttcaaggaaggtttgtcagtattggaattgttc
atgtcaactcacggtgctcgtaaaggtatgactgatactgctttgaagactgctcagtca
gggtacttgactcgtcgtttagttgatgttgctcaggacgttattattcgtgatgatgat
tgtggtactgatcgtggtattacagttagtgccattatggaaggtgacgaaatgatcgaa
ccattatttgatcgtttggttggtcgtttcactgctgaaacagttaaggatcctaagact
ggtgaagctatcgttggtagagatgttatgatggatgaaaacatggctcataagatctgt
gatgcaggtgtaacccatgttaagattcgttcaattcttacttgtgctactccacacggt
gtatgtcgtaaatgttacggtatgaaccttgctactggtgaagaagttgaagttggtgaa
gcagttggtactgttgccgctcaatcaattggtgaacctggtactcagcttactttgaga
actttccacaacggtggtgttgccggtgccgaagatattactcaaggtttgcctcgtgtt
caagaattgttcgaagcacgtaaccctaagggtcgtgcaaccatttctgaagtagatggt
gtaattgattcaattcaagaaaacccagcagaccatactcgtgaaattactgttaagggt
aagattgatactagaagttacagtgttccttacactgcttctgtggctgtatctgaaggc
gactatgttcaccgtggtgataagttgactcttggttctgttgatcctaaggaattgatc
caagttactgatactttgactactgaaaagtacatcttagctgaagttcaaaaggcatat
agaatgcagggtgtagacattgccgacaaacacgtcgaagtattgactcgtcaaatgctt
caaaaggtacgtgtccttgatccaggtgaaactgacatcttaccaggtgaagttatggat
atcggtcaatttagagaccgtaacaaggaagttattatttctggtggtatcccagcaact
gcacaaagcgttatcttaggtattactaaggccgctttggaaactaacagtttcttgtca
gctgcttcattccaggaaactactcgtgttcttactgatgcttcaatcagaggtaagaat
gatccacttcttggacttaaggaaaacgttattatcggtaagattattcctgctggtact
ggtatgcctgtatatcgcaacatggaacctgaagctgacgttaagaagccagattcagtt
tactcaattggtgatattgaaaagcaaatgaaagaaaaagaacaaagtaagtaa
DBGET
integrated database retrieval system
