Lactobacillus helveticus H9: LBH_0586
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Entry
LBH_0586 CDS
T03040
Name
(GenBank) Excision endonuclease subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
lhh
Lactobacillus helveticus H9
Pathway
lhh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBH_0586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhh03400
]
LBH_0586
DNA repair and recombination proteins [BR:
lhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBH_0586
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBH_0586
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
nSTAND1
nSTAND3
AAA_29
AAA_22
DnaJ_CXXCXGXG
AAA_15
AAA_23
AAA_33
AAA_21
BCA_ABC_TP_C
Viral_helicase1
RNA_helicase
NACHT
Mtrc-MtrF_II-IV_dom
T2SSE
cobW
MMR_HSR1
Aq_aa27
AAA_24
Septin
DUF87
Motif
Other DBs
NCBI-ProteinID:
AHI11602
LinkDB
All DBs
Position
611321..614248
Genome browser
AA seq
975 aa
AA seq
DB search
MKKRLTCGMLLSIYKSHLENQRQKRGKLLMVNDKIVIRGAREHNLKDIYVTIPKNKLVVV
TGLSGSGKSSLAFDTLYAEGRRRYVQSLSSYARQFLGQMDKPDVDSIDGLNPAISIDQKT
TSHNPRSTVGTVTEINDYLRLLWARVGHPICPNDGTLIERQSVDQMVDRIMALPERTKIQ
LLAPVIRAKRGEHKDVFKRVQRAGYVRVIVDGEMHEIGEEFNLAKNKRHNIDIVVDRLIM
KDSIKSRLFDSIESALRLSDGYMNVDVIGDEMLNFSEYYACPKCGFTVGEMEPRLFSFNA
PFGACPDCDGLGMNLAVDEDLVVPDKSKTLAEGALAPWKTSNYYTEMLEQACAALDIPMN
KPFNKLTKKQRETILHGSTKPVKFHVTGDFGVNDTTQPFEGVMDNVERRYKHPMSKFMRD
VMGKYMTELTCSTCHGKRLNEKALAVKVMGKDIAEASELSISKSLDFFKSVKLSEQETVI
AKPILKEVCDRLSFLDSVGLDYLTLSRSANTLSGGEAQRIRLATQIGSNLSGVMYVLDEP
SIGLHQRDNDRLIASLKRMRDLGNSLIVVEHDNETMRQADYLIDMGPGAGVYGGKVMAQG
TPEEVEKNPKSLTGQYLSGKKFVPVPLKRRKGNGKKITITGAQENNLKNINVDFPLGKFI
VVSGVSGSGKSTLVNMILKRVLAQKLNHNSTKPGKYKSIRGYKNIEKIIDIDQSPIGRTP
RSNPATYTSVFDDIRTLFAQTNEAKMRGYTKARFSFNVKGGRCEACHGDGIIKIEMNFLP
DVYVPCEVCHGSRYNSETLEVTYREKNIAQVLDMTINEACKFFENIPKIARKLQTIVDVG
LGYVKLGQSATTLSGGEAQRMKLAAELQKLSTGKNFYILDEPTTGLHTDDIKRLLEVLQR
LVDEGNTVLVIEHNLDVIKNADWIIDLGPEGGEGGGNVVATGTPEEIAEVKESYTGQYLK
PVLKRDTKLTRDAEK
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaagcggctaacttgcgggatgctattatcgatttacaaaagtcatctagaaaac
caaagacaaaaaaggggaaagcttttaatggtaaatgataagatcgttattcgtggtgca
cgagaacataatttaaaagatatctatgtaactattcctaaaaataaattagtagtagtt
actggtctatctggatctggtaagagttctttagcctttgataccttatatgccgaaggt
agaaggcgttatgtgcaatcactttctagttatgctagacaattcttgggtcaaatggat
aagccagatgttgattcaattgatggattaaatcctgctatttcaattgatcaaaaaact
acctcacataatccgcgttcaactgtaggaacagtaacggaaatcaatgactatttgcgt
cttttgtgggctcgtgtaggtcatcctatttgtcctaatgatggaactttaattgaacga
caatcagttgatcaaatggtagatcgcatcatggctttaccagaaagaacgaaaattcaa
ttattagcccccgttattcgagctaaacgtggtgaacataaggatgtttttaagcgagta
caacgtgcaggctatgtccgtgttattgtcgatggcgagatgcatgaaattggcgaagaa
tttaatttagctaaaaataagcgtcataacattgatattgtggtagatcgcttgatcatg
aaagacagcattaaatctcgtttgtttgactcaattgaatcagcacttcgtttatccgat
ggctacatgaatgttgatgtcattggcgacgagatgcttaacttttccgaatattacgct
tgtcctaagtgtggctttacagtaggagaaatggaaccaagactcttctcatttaatgcg
ccatttggtgcttgtcctgattgtgatggattagggatgaatttagcagttgatgaagat
ttggttgtgcctgataagagtaaaactttagcagaaggtgcattagctccttggaagacg
tccaattattatactgaaatgttggagcaagcctgtgcagcactcgatattccaatgaat
aagccttttaataaattgactaaaaagcaaagagagacaattcttcacggttcaactaag
ccggttaaattccatgttaccggtgattttggcgtcaatgatacaacccagccatttgaa
ggagtaatggataatgtcgaaagacgttataagcatccaatgtctaaattcatgcgtgat
gtaatgggcaagtatatgacagaactgacttgttcaacttgtcacggtaaacgattgaat
gaaaaagctctggctgtaaaagtgatgggtaaggatatcgctgaagcttctgaactttca
attagtaaatctttggatttctttaagagcgtcaaattaagcgaacaagaaactgtgatt
gctaagccgattttgaaagaagtatgtgatcgtctttcattcttggatagtgtaggatta
gattatttaactctttctcgttctgctaatactttatctggtggggaagctcaacgtatt
cgtttggctactcaaattggttctaacttgtcaggagttatgtatgttttagatgaacct
tcaattggacttcatcaacgtgataatgatcgattaattgcttcacttaagagaatgcgg
gacttaggcaactccttgattgtggttgaacatgataatgagaccatgcgtcaagccgat
tatctgattgatatgggaccaggtgccggtgtatatggcggtaaggtaatggctcaaggt
acgccagaagaagtagaaaagaatcctaaatcattaactgggcaatatttgtctggtaaa
aaatttgttcctgttccattgaagcggcgtaagggcaatggtaagaagatcactattact
ggtgcacaagaaaacaacttgaagaatatcaacgttgattttcctttaggaaaatttatc
gtagttagtggtgtttcaggttcaggtaaatcaaccctggttaacatgattttgaagcga
gtattggctcagaaattaaatcataattcaactaagccaggcaaatataagtcgattcgt
gggtataagaatattgaaaaaataatcgatattgatcaaagtcctattggacgtactcca
cgcagtaacccagctacttataccagtgtatttgatgatattcgtacgctctttgcccaa
acaaatgaagctaagatgagaggctatactaaagcacgtttttcatttaacgttaagggc
ggccggtgcgaagcatgtcatggtgacggaattattaagatcgaaatgaacttcttgcca
gatgtgtatgttccatgtgaggtttgtcacggcagccgttataattcagaaaccttggaa
gtaacttatcgtgaaaagaatattgctcaagtgcttgatatgacaattaatgaagcatgc
aagttttttgaaaatattcctaaaattgcacgtaaactgcaaaccattgtcgatgtaggg
ttaggctatgttaaattaggtcaatctgctacaactttatctggtggagaagcccaaaga
atgaagttagcggcagagttgcaaaaactgtcaactggtaagaatttctatattttggat
gaaccaacgacaggtttgcatactgacgacattaaacgtttgcttgaagttctgcagcgt
ttagttgatgaaggaaataccgttttagtaattgaacataatttagacgtgattaaaaat
gccgattggattattgatttaggtcctgaaggcggtgaaggtggcggcaatgttgttgct
acaggaacgcctgaagaaatagctgaggtaaaagagagctatactggtcaatatttaaag
ccagttttaaagcgtgatactaaattaactagggatgcagaaaaataa
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integrated database retrieval system
