Lactobacillus helveticus H9: LBH_0857
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Entry
LBH_0857 CDS
T03040
Name
(GenBank) DNA-directed DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lhh
Lactobacillus helveticus H9
Pathway
lhh03030
DNA replication
lhh03430
Mismatch repair
lhh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBH_0857
03430 Mismatch repair
LBH_0857
03440 Homologous recombination
LBH_0857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhh03032
]
LBH_0857
03400 DNA repair and recombination proteins [BR:
lhh03400
]
LBH_0857
Enzymes [BR:
lhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LBH_0857
DNA replication proteins [BR:
lhh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LBH_0857
DNA repair and recombination proteins [BR:
lhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LBH_0857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AHI11858
LinkDB
All DBs
Position
890082..893207
Genome browser
AA seq
1041 aa
AA seq
DB search
MKGGYFMQVATLQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELA
KKAGIKPLLGMQLRLNGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVL
TLKDLSKYLADLLLIVPANTKSELLSLFETNKQLGSDLIRDLKELTSDLYLGVYANPSMQ
NYIDYVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGSHY
LVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFVTSEEYLHYLA
QTGLQQRFGQNKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHRVQITTGPGRGS
ACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDTVIKYMYQKYGM
DHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGKITLKEAYQQSRELRL
LVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGPLGIPVTQQTKK
YVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTLQLFQQGKTDAVF
QFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQEAVRYPDPSLKKI
LQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEKGKFIAGTIKQGH
TKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYTAMLNSAAGAKAQ
DYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDFAREIADNTKPYKSL
NDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEIIANVQLTGQNISLSEIL
GNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLIAVQKFAQKFNSRPLNQFQLNESGVGV
GKLIRFKQIRTKNGKNMAFASFADTSGEQEVVIFPRIYEKFGTELKVGDIYLLGLRVQGD
RFDQNKKQYLLTNLRKVNFKE
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaggtggttattttatgcaagtagcaacacttcaaaacctaagttcatttactttg
ctagatagtcctacaaaagtttcagatttaattgaaacagccaagaaaaggggctatcaa
gctgtaggactagctgatgtaaatgtgacatatggtttggtcaatttttatgaattagct
aaaaaagcgggaattaagccacttttagggatgcagttgcgattaaatggtttggttgat
agcacacaaaaatacgacttaattgcttttgccaaaacaaatgcaggttatcataatttg
ttgcgcttatcgagtgcgattaattttctaactgataatggacaaaataataatgtttta
acgttaaaagatctaagtaaatacctggcggatttattactgattgttcctgccaatacc
aaaagtgaattattatctttatttgaaacaaataagcagctaggtagtgacctaattcga
gatttgaaagaattaacttcagatctttatttgggtgtatacgccaatccaagtatgcaa
aattatattgattatgtacgcagtttaagcaaacaatttgatttaccactgcttgcaact
gaagatagcgagtatttgaatccgcatgatcaatttttgcaaaaaacgttgcgcgcgatt
gctacaggagacaagattcaggatgccttgccgttagctaaacaagaaggatcacattat
ttggtcgaagcagagcaattgctccagcgatatcatgaatttgatctagacgatgcagta
aataacacatggcaagttgccgaaaaatgcaatgcggaagttgtttttcaaaagcctgtt
ttgcctaaatatcatcaaaaaaagtttgtcacttcggaagaatatctgcactatttagct
caaactggattgcagcagcgttttggtcaaaataagattccagcagaatatcaaaaacga
ttaaattacgaattgcgcgtcattaatcaaatgggatttgatgattactttttgattgta
tgggacgtgattaattattgccaccgcgttcagattactactgggccagggcgtggctct
gcgtgtggatcactagtttcttattctttgcgaattactgaagttgatccaattgaatat
aatttgctttttgaacggtttttaaatccatctcgtcatgaaatgcctgatattgacttg
gatattcccgatgttcaaagagatactgtaattaaatatatgtatcaaaaatatggaatg
gatcatgcagcacaaattttgacgtttgggacattggctgcaaagcaggcattgcgggat
gtcggtcgagtatttggcttaacgatggttgagatcaaaaaatgggtagatgcaatccct
tattccaaaggcaagatcacattaaaagaggcatatcaacagtcgcgagaattgcgttta
ttagtcgatgctacgcctgaaaataaattgctgtttaaaacggctttaggtttggaaggc
ttaccgcgccactattctattcacgctgctggactcgtaatcagtgacaattcaattgcg
ggaatttcaggcctgcaggcaggcccattggggatccctgttactcaacaaactaaaaag
tatgttgaatctttgggtttgcttaagatcgactttttgggattgcgtaatttaaccgta
ttgggcaatattttaaatttaattcgtcagcaaggcataaagattgatcctaatcaaatt
cctttaaatgatgcacaaactctgcaacttttccaacaaggaaaaacagatgctgtcttc
caattcgaatcaggtggtattcgccaagttttacgtaagcttcatcctgataattttgaa
gatttagtagcggtgaatgccttataccgtccgggtccaatgcaaaatatcgatgccttt
gtcagaagaaagaatgggcaagaggcagtcagatatcctgatcctagtttgaagaaaata
ttgcagccaacttatggcatcttggtttatcaggaacaagtaatgcaaacggcacaaatt
ttggctggcttttctttaggtgaggctgatattttgcggcgtgccatgtctaagaaaaag
caagacgtaattgagcaggaaaaaggcaagttcattgctggcaccatcaaacaaggccat
accaaggctgtagcggagcgggtatatcaatatattgagcagtttgctaattatggattt
aaccgttcccacgccgttgcttatacaaaaattgcctactggctagcctatttaaaagtt
cattatcctgcagctttttatacggcgatgttaaattcggctgctggagctaaggcacaa
gattatattatgcaggcgcaggaagctaatattaagattttgcctcctgatattaatcac
agcagtttggaatatgctttgaaaaataaacagattttggttggattgaaggctattaaa
ggtttaagagtagattttgctagagaaattgcagataatactaagccttataaatcatta
aatgattttctgcgtagaatcgatcctaagtttttgcaagctgatgctatcaaggcttta
attatggctggtgcctttgatgggcttgaaaaaaatcgcaatgaattattggttaattgc
gatgaaataattgctaatgtgcaattgacaggtcaaaatatttctttatctgaaatattg
gggaatgcaccgcttaagccagcagacgaaccaacgggtgcagaaaaagctgcaatggaa
gaaaaagttttaggcttttcgacaactacttcgcctttaattgctgttcaaaaatttgct
caaaaatttaatagcagaccgttaaatcaattccaattgaatgaatcaggagttggagtg
ggcaaattgatcaggttcaagcaaattagaaccaaaaatggcaaaaatatggcgtttgcc
agctttgctgatacttctggtgagcaggaggttgtgatttttcctcgaatttatgaaaaa
tttggtacagaattaaaagtcggtgacatttatttattaggtttacgcgtgcaaggagat
cgttttgaccaaaataaaaagcaatatctgcttaccaatttgcgaaaagtaaattttaaa
gaataa
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