Lactobacillus helveticus H9: LBH_0897
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Entry
LBH_0897 CDS
T03040
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lhh
Lactobacillus helveticus H9
Pathway
lhh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBH_0897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhh03019
]
LBH_0897
03400 DNA repair and recombination proteins [BR:
lhh03400
]
LBH_0897
Enzymes [BR:
lhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBH_0897
Messenger RNA biogenesis [BR:
lhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBH_0897
DNA repair and recombination proteins [BR:
lhh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBH_0897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
SecA_DEAD
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AHI11898
LinkDB
All DBs
Position
933292..935091
Genome browser
AA seq
599 aa
AA seq
DB search
MFHIKLGKFMNPEKILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPA
LMNEGVTLVISPLISLMKDQIDSLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYI
TPERLAMDYFRYQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFEGINSLKSKPTILAL
TATATPAVQDDIGQQLNIPQENFIITSFARPNISFKVVNSPQNTQLYIAQYIKAHPDDAG
IIYTNTRKKVESLTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGMG
IDKSNVRFVVHASSARNIESYYQEAGRAGRDGEESEAVMIYHPGDLHQYRYFIEESDADQ
KYKELQYQKLQAITDYVNTGECLQQFIVRYFGQDCPPCGKCSNCLNQGDLKDITTDAQKV
IALVYELDGRFGKNIVAQCLVGSTSQRMQEIHADQYEHFNSLKISQKEAVSLIDYLIASG
YLKIEGIKYPLVHVTNRGWDVLDGKATVKRRISKIQKRKQSFAQDADTNLFKALREKRKE
LAKKQRVPAFMIFSDRSLHDMTKIKPQNENDFLEVSGVGQAKLKKYGQIMLKVIEKFTN
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtttcatattaagttaggaaaatttatgaatccagaaaaaattttaaagcaaactttt
ggctattctagttttcgtccaggtcaaaagaaagtaattgatttaattttaaatagaaaa
aacgttttagctgttatgccaacaggtgcaggtaaatctctctgttatcaggttccggct
ttaatgaatgaaggcgtgacgttagtcatttcacctttgatatcgttaatgaaagatcaa
attgattcgctaaagcaaaatggtattaacgcagcggcgttaaactcaaccactccgcaa
gaagaagtaaatcctattttacgacaagcatatgaaggtaaaatcaagttgatctatatc
acgcctgagcgtttagcaatggactattttagatatcagcttaattttttagatgtcgat
ttggttgcagtggacgaagcacactgtatttcgcagtggggacatgattttcgtccagcg
tataggcaaatttttgaaggaattaattctcttaagagcaaacctaccatcttagcatta
acggcaactgctacaccggcagttcaagatgatattgggcagcaattaaatattccacaa
gagaacttcattattacttcatttgcacgcccaaatataagctttaaggtggttaactct
ccgcaaaatacccagctttatattgcacaatatattaaggcccatccagatgatgccgga
attatttatacgaatacccgtaaaaaagttgaatctttaactgactatcttgctaaaaaa
ggtatttcagtaggtgcttatcatggaggaatggatgcaaaagaaagatcacaaatccaa
gaagcattccaattcgatgaatttcaagtgattgtagcaacgaacgcttttggcatggga
attgataaaagcaatgtccgttttgtagttcatgcatcgagtgctcgtaatattgaaagc
tattatcaagaagctggtcgtgccggtcgtgatggtgaagaaagtgaagcggtgatgatt
taccatccaggagatcttcaccagtatcgctactttattgaagaatcggatgcagatcaa
aaatataaggaattgcaatatcaaaaattgcaggcgattactgattatgtaaacactggt
gaatgcttgcagcaatttatagtgcgctattttggtcaggactgtccgccttgtggtaaa
tgttcaaattgtcttaatcaaggtgatttaaaagatataactactgatgcacagaaggtt
atcgcgctggtctatgaacttgatggccgttttggtaaaaatattgtagcgcaatgtcta
gtgggttcgactagtcaacgaatgcaagagatacatgcagatcaatatgaacattttaat
agcttaaaaatcagccagaaggaagccgtaagcttgattgactatttaattgcttctggt
tacttgaaaattgaagggattaaataccctttagttcacgtaaccaatcggggatgggat
gtcctagatggaaaagccacagtaaaaagaagaattagtaaaattcaaaagagaaagcaa
agttttgcccaagatgcagatactaatttattcaaagctttaagggaaaagcgcaaagaa
ctggctaagaagcaaagagttcctgcctttatgattttttctgatcgtagtttgcatgat
atgactaaaattaagccgcaaaatgaaaatgatttcttagaagtaagtggcgtgggacaa
gctaaattgaaaaagtacggtcaaatcatgcttaaagtaattgaaaaatttacaaattaa
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