Lactobacillus helveticus H9: LBH_1109
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Entry
LBH_1109 CDS
T03040
Name
(GenBank) DNA polymerase subunit III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lhh
Lactobacillus helveticus H9
Pathway
lhh03030
DNA replication
lhh03430
Mismatch repair
lhh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBH_1109
03430 Mismatch repair
LBH_1109
03440 Homologous recombination
LBH_1109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhh03032
]
LBH_1109
03400 DNA repair and recombination proteins [BR:
lhh03400
]
LBH_1109
Enzymes [BR:
lhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LBH_1109
DNA replication proteins [BR:
lhh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LBH_1109
DNA repair and recombination proteins [BR:
lhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LBH_1109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
RNase_H_2
HHH_3
tRNA_anti-codon
DEDDh_C
T2SSK
Zn_ribbon_8
Zn_ribbon_3
YhfH
Motif
Other DBs
NCBI-ProteinID:
AHI12104
LinkDB
All DBs
Position
complement(1161469..1165779)
Genome browser
AA seq
1436 aa
AA seq
DB search
MANKNDLFLKLLKQVHFPNSFEDNDLLQKGKVENVDVYAKEHRWDIHVFFDTPLKYDTYV
ALRKAIEETFSAFVNVRFFVGTGDGSDKYLPDYWHYAVQNSNILSPVAREFLAGQKPKKE
NGRWVIPVDNNVIDGLIEQKTLDDLAEEMRDFGFFNLKFITEVDQTNLQNSLESLQELQQ
EHEKSMQEAFNNTPEKPKPKPKQQYQTKRTSYGSRKLDEKAPITQIQDVEDGTRNVVIKG
NIFNIESRELKNGSVIFTGEITDYTDSIAFKMFASNKEQIEQMAAIKPGTWAKMQGSAMD
DQWVHDVVFNISSFETVEHIGRTEKYEGEQKRVELHLHTNMSQLDATNAPSDFIKTAKKF
GQKAIAITDHGDLQSFPEAYSTGKATGTKILYGVEANMIDDHALLVINPAPMTYEDREFV
IFDVETTGLSSVYDTIIEIGAVKMKNGEVIERFDKFINPHHPLSEQTINLTSITDEMVSA
ADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEVSRLLHP
EQNRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMYKLLDAFKKKYNEDNLNNLNGYAAH
GEVYKRARPSHMTVLAKDQKGLKNLYKLVSIASTKNFYRIPRTPKSDLARLHEGLFYGSG
CWQGDVFIAMIQKGYDEAREKAKFYDFLEVQPPANYSQLIEDGLIKDEAQLEDIIRNIYK
LGKELNKPVVATGDAHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAFSF
LGEDIAKEIVIDNTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLP
KIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEV
NPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPKCGTQLVKDGQDIPFATFLGFHGDK
VPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYAKHFDEERDLKARN
AELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSI
HDNILKFDILGHDDPTMIRHLQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSET
GTLGVPEFGTRFVRGMLEETKPTTFAELLQISGLSHGTDVWLGNAEDLVNNGTCKLKDVI
GCRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDWYIPSCLKIKY
MFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQ
DKGNDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPG
LGDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDENQLSLF
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaataaaaatgatcttttcttaaaattgctaaaacaagttcatttcccaaatagt
tttgaagataatgatcttcttcaaaagggaaaggttgaaaacgtggatgtttacgctaaa
gaacataggtgggatatccatgttttttttgatactcctttgaaatatgacacgtatgta
gcattaagaaaagcaatagaagaaactttttctgcatttgtaaatgtaagattttttgtt
ggtacaggtgatgggtctgataaatatttgcctgattactggcattatgcagtacaaaat
tcgaatattttatccccagttgcaagagaatttttagctggacaaaagcctaaaaaagag
aatggtcgttgggtcattccagtcgataataatgtaattgatggattaattgaacagaag
actttagatgatctagctgaggaaatgcgtgacttcggtttctttaatttgaaatttata
actgaagtggatcagactaatttgcaaaatagtttagagagtctgcaggaacttcagcag
gaacatgaaaagagcatgcaagaagcttttaataatactccagaaaaaccgaagccgaaa
ccaaaacagcaataccaaaccaagcgtactagttatggcagtcggaaattagatgaaaaa
gctccgattacacaaattcaagatgttgaagacggtacaagaaatgttgtaatcaaaggt
aacatttttaatattgaaagcagagagttgaaaaatggttcagtaatttttacaggtgaa
attactgactatactgattcgatcgcttttaaaatgtttgcttcaaataaggaacaaatt
gaacaaatggctgctattaagcctggtacctgggctaaaatgcagggatcagccatggat
gatcaatgggttcatgatgtagtattcaatattagtagttttgaaacagtagaacatatt
ggtcgaacggaaaagtatgaaggtgagcaaaagagggtagaacttcatttgcacaccaat
atgagtcaattggatgcaactaacgccccaagtgattttattaaaactgctaagaagttt
ggtcaaaaagccattgcgataacagatcatggtgatttgcaatctttccctgaagcttat
agtacaggtaaagctactggtactaagattttatatggtgttgaagcaaatatgattgat
gaccatgcattattggttattaatcctgctccaatgacatatgaagatcgtgagtttgtt
atcttcgacgttgaaactaccggtttatcatcagtttatgacactatcattgaaattggt
gcggttaagatgaagaatggtgaagttattgaaaggtttgataaatttattaatccgcac
catcctttgagtgaacaaactattaacttaacttcaattaccgacgagatggttagtgcc
gctgatgatgaagatgtagttattaagcaattccaagatttctatggtgatcgtcctcta
tgtggacacaatgttcaatttgatgttggttttgttaatgcagcattaagaagagcgggc
cttagtgaaattactcagccagttgttgatacgctagaggtttctcgtttgcttcaccca
gagcagaaccgtcatactctggattcattggcaaagaaatataatgtttctttggagcat
caccatagagctaatcaagatgcggaagcaactggttatttaatgtataaactgttagat
gcttttaagaaaaagtacaatgaagacaatttaaataatttgaatggctatgccgcacat
ggtgaagtttataaacgtgctcgtccatctcatatgaccgttttagctaaagatcagaaa
ggattaaagaatctttataagctggtttcaatcgcaagtaccaagaacttttatcgaatt
ccgcgtacacctaaatctgatttagctcgtttgcatgaagggctgttttatggttcaggt
tgttggcaaggcgatgttttcatagcaatgatacaaaagggttatgacgaagctagagaa
aaggctaagttttatgattttttggaagttcaaccacctgcaaattattctcaattaatc
gaagatggtttaattaaagacgaggcgcagcttgaagatattattagaaatatttataag
ctgggtaaagaattaaataagcctgttgtagcaaccggggatgcacactatgttgaacct
catgatgctatttatcgaactattttaatttcagctcaacgttctaatccaaatagaaat
aagccgcaacctgacttgcatttttattcaacgcaagaaatgcttgatgcgtttagtttt
ttaggtgaagacatagctaaagaaattgttatagacaataccaataagattgctgatgaa
atttctgagattcagccaattaaagatggattgtatccaccgcatattgctcatgctgat
gaagaaatgaagaaattaacttatgataaggcttatgagctttacggtaagccgttacct
aagattgttaaggatcgaattgatctagaactaaattcaattatttcaaatggatacgcg
gttatttatttaatttctcagcgtttggtagctaagtctaacaaggatggctatttggta
ggttcacgtggttccgtaggatctagtttagtagctactatgtcaggaattactgaggtt
aatccacttgcgccacattatcgatgtcctaagtgtaaatactcgcaattctttgaaaat
ggtgaatatggttccgggtttgacttgccagacaaggcttgtcctaaatgcggcactcaa
ttggttaaagatggtcaagatattccatttgcaactttcctaggattccatggggataag
gttcctgatatcgatttgaatttctcaggagactatcaacctgtagcccataactttatt
cgagtaatgtttggtccagataattcttatcgtgccggtacaattgccactgttgcagat
aaaactgcatatggttacgcaaaacactttgatgaagagcgtgatttgaaggcaagaaat
gcggaattagatcgattagctagcggtattcgtggtgtaaaaagaactactggtcaacac
ccggctggtattgttgtagttcctgatgatatggatatttatgactttacgccagtatct
tatccagccgacgatgttaatgcagcatggttgattacgcactatgacttccactccatt
cacgataacattttgaaatttgatatcctgggtcacgatgatccgactatgattcgtcac
ttacaggatctttcgggaattgatccattgactattcctccagacgatccaggtgttatg
tctctattttcaagtcctaagattttaggggttacacctgaacaaattcagtcagaaacc
ggtactttaggtgtgcctgaatttggtactcgttttgttagagggatgcttgaagaaact
aagccaacaacatttgcggaattactgcagatttcgggtttgtcacatggtactgacgta
tggttaggcaatgctgaagatttagtcaataatggtacttgcaaattgaaggatgttatt
ggttgtcgtgataacatcatgatggacttgattcactggggagttaagcctgaagttgcc
ttttcaactatggaatctgttcgtcacggccgtggtatcagtgatgaaaatatggctatt
ttaaagaaaaataaaaatattcctgattggtatattccttcatgtttgaagatcaagtat
atgttccctaaggctcacgctactgcgtatattttaatggctttgcgtattgcttggttt
aaagtatattatcctgaaatttattacactgcttacttctcagtgcgtgctgatttattt
gatttagttgcaatgagtcatggtaaaaacaccgtgaaggcggcaatgaaagagattcaa
gataagggaaacgatgcttcagcaaaagataagagtttgctaacagtcttagaaattgct
aatgaatgccttgaacgtggcatcaagattaaaatggttgatattgaccaatctgaagct
acggacttcaagatcttagataaacacactattttggcaccatttaatgccgtacctggc
ttaggtgataatgcagctaagcaaattgtggccgctcgtgctgaaaagaaattcttatct
aaggaagatttagcaaaacgtggcaaagtttctcaaacaatcatgaattattttgaagat
aatggtgtactagaaggcatgccagatgaaaaccaattatcacttttctag
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integrated database retrieval system
