Companilactobacillus heilongjiangensis: JP39_01700
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Entry
JP39_01700 CDS
T04057
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhi
Companilactobacillus heilongjiangensis
Pathway
lhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JP39_01700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhi03019
]
JP39_01700
03009 Ribosome biogenesis [BR:
lhi03009
]
JP39_01700
Enzymes [BR:
lhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JP39_01700
Messenger RNA biogenesis [BR:
lhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JP39_01700
Ribosome biogenesis [BR:
lhi03009
]
Prokaryotic type
rRNA helicases
JP39_01700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
CMS1
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
ALB28195
UniProt:
A0A0K2LAA3
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All DBs
Position
398074..399621
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AA seq
515 aa
AA seq
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MKFKELDLDPRLLSAVDEAGFEETTPIQAQTIPLVMTGDDVIGQAQTGTGKTAAFGLPLL
NAVDTQSSDIQALIISPTRELAIQTQEELYRLGSKKKVKVQSVYGGSDIRRQIRALKSHP
QIIVGTPGRMLDHINRHTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPNKHQTLLF
SATMPKPIIKIADKFMTDPKVVKIKSKELTADNIEQYFVKAKEFEKFDLMTRLFDVQAPE
LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLEFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLRTIENLTKK
RMDPLAPPTDKEVLKGQLESVKEDIKDTLAHDKHLDRFNDAVEELLSEYSADNIARIFLS
ESIKDAESVPVKIAPERPLPSRKVSHSRSGHGRRGGRSNGDHSYGNHRGGNRRGNDRHGS
GNRNHDEKGGKRREHDNKRNGRSKKSFKIRTNLEK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaaagaattagatttagatcccagattattgagtgccgtagacgaagctggt
tttgaggaaactacaccaatccaagctcaaactattccactagttatgaccggcgatgac
gttattgggcaagctcaaactggtacaggtaagacggcagcctttggtttaccattacta
aatgccgttgatactcaatcaagtgatattcaagcattgattatctcaccaactagagaa
ttagctattcaaactcaagaagagttatatcgtttaggtagtaagaagaaagttaaggtt
caaagtgtttatggtggttctgatattagacgccaaattcgtgctttgaagagtcatcct
caaattattgtcggtacacctggtcgtatgcttgaccatatcaaccgccacactttgaag
ttgcacaatgttaagactgttgtgcttgatgaagctgatgaaatgttggacatgggattc
gttgaagatatcgaaagtatcttatcaaacgttcctaacaagcaccaaacattgttgttc
tctgcaacaatgcctaagccaatcattaagattgctgacaagttcatgacagaccctaag
gttgttaagatcaagtcaaaagaattaactgctgataacatcgaacaatactttgttaaa
gccaaggaatttgaaaagtttgacttgatgacacgtcttttcgacgttcaagctccagaa
cttgcattgatcttcggtcgtacaaagcgtcgtgttgatgaattgacacgtggtttgcaa
gctcgtggttacaatgctgaaggtattcacggtgacttatcacaagataagagaactagc
gttttacgtaagttcaaagccggtaagctagaattccttgttgcaactgacgttgctgct
cgtggtttggatatttctggtgtatcacatgtttataactatgatattcctcaagaccca
gacagttatgttcaccgtattggccgtactggtcgtgccggacattctggtgtgtcagta
actttcgttacaccaaacgaaatgggttacttacgtacaattgagaaccttacaaagaaa
cgtatggatccattggctccaccaactgataaagaagttcttaaaggacaacttgaatca
gttaaggaagatatcaaagatactttggcacatgacaagcacttggatcgtttcaacgat
gcagttgaagaattgttgtcagaatattctgctgataacattgctcgtatcttcttgagt
gaatcaatcaaggatgctgaaagtgttcctgttaagattgctcctgaaagaccacttcca
tcaagaaaagttagtcacagccgttcaggccatggccgtcgtggtggtagaagcaatggt
gatcacagttatggtaatcatcgtggtggaaacagacgtggtaatgatcgtcacggtagt
ggcaatcgtaatcatgatgaaaaaggtggcaaacgccgcgaacatgacaacaaacgtaat
ggtcgtagcaagaagtcattcaagatcagaacaaatcttgaaaaataa
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