Companilactobacillus heilongjiangensis: JP39_05665
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Entry
JP39_05665 CDS
T04057
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lhi
Companilactobacillus heilongjiangensis
Pathway
lhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JP39_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhi03019
]
JP39_05665
03400 DNA repair and recombination proteins [BR:
lhi03400
]
JP39_05665
Enzymes [BR:
lhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JP39_05665
Messenger RNA biogenesis [BR:
lhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JP39_05665
DNA repair and recombination proteins [BR:
lhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JP39_05665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ALB28888
UniProt:
A0A0K2LCI0
LinkDB
All DBs
Position
1233203..1234993
Genome browser
AA seq
596 aa
AA seq
DB search
MKLETILKDEFGYDTFRPGQKELIEKVMAGKKAMGIMPTGGGKSICYQLPATILSGLTLV
VSPLISLMKDQVDSLIEAGIPATYLNSTVEWHDREERMRYIESGAVKLLFVAPEKIVDDE
FFSWLSGLDISLIAIDEAHVLSSWGHDFRNSYLKMVGPLQQLPGDIAWLALTATATEQVQ
DDLAKILDIPEENIVKTGFDRDNLALKIERGVDKSEYILNYVKAHIDESGIIYAGRREDV
DNIYQFLKENDVLVGRYHAGLSDKERHQQQEDFLFDRINVIVATNAFGMGINKTNVRYVL
HFTIPGTIESYYQEVGRAGRDGLPAEAILLYTPADLRLHQFFIDKSLGDDQYKLSLKNKL
FEMSRYAETETCLMKFILDYFGEKNTDVCGRCSNCLDDREVVDVTADAQKVLSCIVRMGQ
RYGKKVTTRVLVGKDDVADDWRHFEKLSTFGIFKDKTLKETSRLIEFLSANGFLRSSGGE
YPTLLLSKKGADVLKGKINVAKKRDVNHVAPSKSMVADGSFDVNLFEKLRGLRLEFARKQ
ALPPFMIFSDKTLKDMCVRIPTNSNEFLAVSGVGKVKLEEYGESFIEEIKTYQATQ
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattagagaccatcttaaaagatgaattcgggtacgatacttttagacctggtcaa
aaagagttgattgaaaaagtcatggccggtaaaaaggcaatggggattatgcctactggt
ggtggaaagtcgatttgttaccaattgcctgcaaccattttgtcaggcttgaccctagtt
gtatcgccattgatttctttgatgaaagaccaagttgacagtttaattgaagctggtatt
cctgcaacctacttgaatagcaccgttgaatggcatgaccgtgaggaacggatgcgctat
atcgaaagtggggcagttaaactgttatttgttgcgcctgaaaagattgttgacgatgaa
tttttcagttggctgtcaggattagatatctccttgattgcaattgacgaagcccatgta
ctgtcgtcttggggacacgatttcagaaatagttatttgaaaatggtcggtccgttgcaa
cagttgcccggtgatattgcctggttagctttgacggcgacagcaactgaacaagttcaa
gatgatttggctaagattctggatattcctgaagaaaatatcgttaaaacaggctttgat
cgtgataatctagcgctcaaaattgagcgaggtgttgataagtcggagtatattctgaat
tacgtcaaagctcatattgatgagtctggaatcatttatgcaggccggcgggaagatgtt
gacaatatttatcaatttctcaaggaaaatgatgttctagtcggacgttatcatgctggt
ttgagtgataaagaacgtcatcagcaacaagaggactttcttttcgatcgaatcaatgtg
attgtggcgactaatgcctttggaatggggatcaataagaccaacgttcgctatgtgcta
catttcaccattcctgggacaattgagagctattatcaagaagtcggtcgtgctggacgt
gatggcctaccagctgaagcaattttactgtatacgccagctgacctgcgtttacatcag
ttctttatcgataaatcattaggtgatgaccagtataaactcagtttgaagaataaattg
tttgaaatgagtcgttatgctgaaactgaaacttgtctgatgaaatttattctggattac
tttggtgagaagaatactgatgtctgtgggcgttgttctaactgtcttgatgatcgtgaa
gttgtcgacgttaccgcggatgctcagaaggtactcagctgcattgtacgtatggggcag
agatatggtaagaaagttacgactcgagtattagttggtaaagatgatgtggctgatgat
tggcgacactttgagaaactatcgacattcggtatttttaaagataaaactttgaaagaa
acaagtcgtttaattgaatttctctcggctaatggctttttacgcagcagcgggggagaa
taccctactctgttattgtctaaaaagggagccgacgttctcaaaggtaagatcaatgtt
gcgaagaagcgtgacgttaatcatgttgcaccaagtaaatcaatggttgctgatggaagt
tttgacgtcaatttattcgaaaagttgcgtggattacgtttagagtttgctagaaagcag
gctttaccaccattcatgattttctccgataagaccttaaaggatatgtgtgttcgtatt
cctacaaatagtaatgaattcttggcagtaagtggagtaggaaaggttaagctagaagag
tatggtgaaagttttattgaagaaataaaaacttatcaggcaacgcagtaa
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