Companilactobacillus heilongjiangensis: JP39_07830
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Entry
JP39_07830 CDS
T04057
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lhi
Companilactobacillus heilongjiangensis
Pathway
lhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JP39_07830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhi03019
]
JP39_07830
03016 Transfer RNA biogenesis [BR:
lhi03016
]
JP39_07830
Enzymes [BR:
lhi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JP39_07830
Messenger RNA biogenesis [BR:
lhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JP39_07830
Transfer RNA biogenesis [BR:
lhi03016
]
Prokaryotic type
tRNA degradation factors
JP39_07830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ALB29272
UniProt:
A0A0K2LD89
LinkDB
All DBs
Position
complement(1712959..1715289)
Genome browser
AA seq
776 aa
AA seq
DB search
MPDKDNKLIADILEVFRSNPDRRYKSEQIEDVLRMHGASAFKRVVQALAVLEGESKIALT
NKDEFKMAAPETVVEGTFKGNDKGFGFVRYDEVDPDAFIARTNTMFAVNGDTVKVKITKP
SNPWIDKGPEGEIIEIEERSLTKAVGEFHAYSDAQVEKTGHYGYVQSHEKKIASYMIFIS
DKGLHPQIGDMVQVSIDEYPNVKHPQSMEGTALEVIGNKNDPGVDIMSIVVDNDINPEFP
NEVLKEAEKVPDHVLDSDRVGRKDLTENMVITIDGDDSKDFDDAVGLDMLPNGNYHLEVD
IADVTHYVKEGSPLDEEAYSRGTSTYLVDRVIPMLPFRLSNGICSLNPGEDRLALTCEME
IDHEGNVVKHDIYPSVIRSKYRMTYNNVNEILKGDEELTEEYAPVVPMLKEMAELHEILF
NKRHERGAIDFEETEAQIIVDENGKPIDIKLRERGTSEKMIESFMLAANETVAEHYNVKH
VPFLYRVHEKPDEDKVKNFFEFAAAMGVQVKGNLKEITPKMFQNVLASVVGTPEEQVVTI
MLLRSLQQARYSDEPLGHFGLAAKYYTHFTSPIRRYPDLTVHRMIHSYAENGFTDEEQTK
WGNKLQEIAEHTSGRERISINAERAVDDLKKTEYMADQVGNTFDAVVSSVTSFGMFIQLD
NTVEGLIHISNMKDDFYEYDEKSMSMHGRGTGKTFRVGEPIKVKLIRADVEHRQIDFERV
LTPEEQEQADKREAEFKKKRSMQHGRGRGGHGRHNDNNKNHGDKNSHKRRGKYESR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgccagataaagataataaattaattgcagacatactagaggttttcagaagcaatcct
gaccgtcgttacaagtctgaacagattgaagacgtgttaagaatgcatggagcatcagct
ttcaagcgtgttgttcaagccctagctgtcttagagggtgaaagcaaaattgctttgacc
aacaaagatgaattcaagatggccgcaccagagactgtcgttgaaggaacatttaagggt
aatgataaaggattcggtttcgttagatatgacgaagttgaccctgacgctttcattgcc
agaactaatacgatgttcgctgttaatggcgataccgttaaagttaagattactaagcct
tcaaatccttggatcgacaagggaccagaaggagaaattattgaaattgaagaacgttca
ttaaccaaggctgtgggtgaattccacgcttatagtgatgctcaagttgaaaagactggc
cattacggttacgttcaaagtcatgaaaagaagattgcttcttatatgattttcatttct
gacaagggactacacccacaaattggtgatatggtacaagtttctatcgatgaatatcct
aatgttaaacaccctcaaagtatggaaggtacagcactagaagttatcggtaataagaat
gaccctggtgtcgatattatgtcaatcgttgttgataatgatattaaccctgaattccct
aatgaagtgttgaaagaagctgaaaaggttccagaccacgtattggattcagatcgtgtt
ggtcgtaaagacttaaccgaaaatatggttatcacaattgatggggatgactcaaaagat
ttcgatgatgccgttggactagatatgttgccaaacggaaattatcatttggaagtcgat
atcgccgatgttactcactatgttaaagaaggttctccacttgatgaagaagcttacagt
cgtgggacaagtacttacttggttgaccgagtaattcctatgttgccatttagattgtca
aatggtatttgttcattgaatcctggtgaagaccgtttagctttaacttgtgagatggaa
attgaccacgaaggtaatgtcgttaaacacgatatttatcctagtgttatcagatctaag
tatcgtatgacttacaacaacgttaatgaaattcttaagggcgacgaagagttgacggaa
gaatacgctccagttgtaccaatgctaaaggaaatggctgaactacatgaaatcttgttc
aacaagcgtcatgaacgtggtgccattgactttgaggaaactgaagctcaaatcatcgtt
gatgaaaatggtaagcctatcgatattaagttaagagaacgtggaacatctgaaaagatg
attgaatcattcatgttggctgctaacgaaacagttgctgaacactacaatgttaaacat
gttcctttcttatatcgtgtccacgaaaagcctgatgaagacaaagttaagaacttcttt
gaatttgctgctgctatgggtgtgcaagttaagggtaatttgaaagagattactcctaag
atgttccaaaatgttttggcaagtgttgtcggtactcctgaagaacaagttgttacaatt
atgttgttgagaagtttacaacaagctagatattctgacgaaccactaggtcactttggt
ttagctgctaagtactacactcactttacatctccaatcagacgttaccctgacttgaca
gttcaccgtatgattcacagttatgctgaaaatggctttactgacgaggaacaaactaag
tggggcaacaagcttcaagaaattgctgaacacacatctggtcgtgaaagaatttcaatt
aacgctgaacgtgctgttgatgacttgaagaagactgaatacatggctgaccaagttgga
aatactttcgatgctgttgttagttctgtaactagctttgggatgttcattcaattggat
aataccgttgaaggtttgattcatatttcaaacatgaaggatgacttctatgaatatgat
gaaaagagtatgtcaatgcatggccgtggtacaggtaagacctttagagttggtgaacca
attaaggttaaacttatcagagctgacgttgaacatcgccaaattgactttgagcgtgtc
ttgactccagaagaacaagaacaagcagataagcgtgaagcagaatttaagaagaagcgt
tcaatgcaacatggacgcggacgtggtggtcatggtcgccacaatgataacaataaaaac
catggtgataagaatagccataaaagacgtggtaaatacgaaagtcggtga
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