Companilactobacillus heilongjiangensis: JP39_08120
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Entry
JP39_08120 CDS
T04057
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lhi
Companilactobacillus heilongjiangensis
Pathway
lhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JP39_08120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhi03019
]
JP39_08120
Messenger RNA biogenesis [BR:
lhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JP39_08120
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
ATP-synt_B
KH_2
KH_KhpA-B
V-ATPase_G
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ALB29322
UniProt:
A0A0K2LDE4
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All DBs
Position
complement(1782306..1783871)
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AA seq
521 aa
AA seq
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MYPAIITFSFAIVTLIVGVLFGYALCKDAYEKKLSQAKQTAGDIVSDAKKAAKSLKKETL
LEAKDEIHQYREKQEDELKERRRDVQKQENRVLERQDILDKKDQSLEKREENIENNENNI
SARQHKLDEKAKQLTDTLNEQQAELTRVSNLTREQARKIILDKLNKELVHERAKMIQESD
EQAKQRAEKDAKALIVAAIQRSAADTVSESTVTTVTLPNEDMKGRIIGREGRNIRTIEAL
TGVDLIIDDTPEAVALSAYDPVRREIARMALEKLIEDGRIHPARIEEMVDKSRKEMDDHI
REVGEQTVYSLGISSMNPDLIKIIGRMEYRTSYGQNVLNHSIEVAKLSAVMAAEMGEDVM
LAKRAGLLHDIGKAIDREVDGSHVEIGVDIATKYKEPEVVVNTIASHHGDVEPTSLIATI
VAAADAISASRPGARSESMENYIHRLEKLEEIANKHEGVDHSYAIQAGHEIRVMVKPEEI
SDDQAAILARDMKGEIEDNLEYPGHIKVTVVREIRKVELAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtatcctgctatcataaccttctctttcgctatagtaacattaatcgtaggggtcctt
ttcggatatgctctctgtaaagacgcttacgagaaaaaactttcacaagcaaaacaaact
gctggggatatcgtatcagacgcaaaaaaggctgcaaagtctcttaaaaaggaaactttg
ctagaagccaaagatgagattcatcaatatcgtgaaaaacaagaagatgagttgaaagaa
cgccgccgcgatgttcaaaaacaagagaatagagttcttgaacgacaagacattttggat
aaaaaggaccaatcgcttgaaaagcgtgaggaaaatatcgaaaataacgagaacaatatt
tcagcacgacaacataaacttgatgaaaaagctaaacaattgactgatactcttaatgaa
cagcaagcggagctgacaagagtaagtaacttaactcgtgaacaagcaagaaagattatt
cttgataagttgaacaaagaattagtccatgaacgtgccaagatgatccaagaaagcgac
gaacaagccaaacaacgtgctgaaaaagacgctaaggctttaattgttgccgctattcaa
agaagtgcagctgatacagtttctgaatcaactgtaacgaccgttacattgcctaatgaa
gacatgaaaggtagaatcattggccgtgagggtagaaatatccgcacgattgaagcgctt
acaggtgttgatttgattattgatgatactcctgaagcagtcgctttgagtgcctatgat
cctgtcagacgagaaatcgctcgaatggctttggagaaattgattgaagatggtcggatc
catcctgcacgcattgaggaaatggtcgacaagtccagaaaagaaatggacgatcatatt
cgtgaggttggtgaacaaaccgtttatagtttgggaatcagctcaatgaatccagattta
atcaagattatcggacgaatggaatatcgtacgagttacggtcaaaatgttttgaatcac
tctattgaagtagctaaattatccgctgtaatggctgctgaaatgggtgaagatgttatg
ttagcaaaacgagcaggtttattgcacgatatcggtaaagctatcgatcgtgaagttgac
ggttcccacgttgaaattggcgtggatatcgcaaccaagtataaagaaccagaagtagtc
gttaatacgattgcttcacatcatggggatgtggaaccaacatcattaattgcaacaatc
gttgctgcggctgatgctatttcggcatcacgtcccggcgctagatcagagtcgatggag
aattatatccaccgtcttgaaaaactagaagagattgccaacaagcacgagggtgttgat
catagttatgctattcaagctggtcatgagattcgtgtcatggttaagccagaagaaatt
tccgatgatcaagctgcaattttagctcgtgatatgaaaggtgaaattgaagataacctt
gagtatccaggtcatattaaagttacagttgttcgtgaaatcagaaaagtcgaattagcg
aaataa
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