Lentilactobacillus hilgardii: G8J22_01403
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Entry
G8J22_01403 CDS
T06851
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lhil
Lentilactobacillus hilgardii
Pathway
lhil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G8J22_01403 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhil03019
]
G8J22_01403 (srmB)
03400 DNA repair and recombination proteins [BR:
lhil03400
]
G8J22_01403 (srmB)
Enzymes [BR:
lhil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8J22_01403 (srmB)
Messenger RNA biogenesis [BR:
lhil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G8J22_01403 (srmB)
DNA repair and recombination proteins [BR:
lhil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G8J22_01403 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_22
TniB
PhoH
Motif
Other DBs
NCBI-ProteinID:
QIR09424
LinkDB
All DBs
Position
1391378..1392832
Genome browser
AA seq
484 aa
AA seq
DB search
MLNLQDELTKYFGFKRFRPGQEKILTMLLKGKNVLAILPTGGGKTLLYQLYAAITHQRII
IVSPLISLMQDQVSRLQFLGSKRVIALTSAIDFKERQFIMNHLEQYQFIYASPEMLANPQ
IMEKFKQLSVGLLVIDEAHCISEWGPDFRPDYLKLNQVRKSLKMPLTLMMTATATTKTRQ
DILERMEMDQDQVNQIVLSVNRKNIFLSARVCKNQREKDDLLVKLVSKLHGAGIIYFSSR
ATAETVAALLNHDTSKRVEAYHGGMVGQYRFRIQQQFMNNEIDIVCATSAFGMGIDKNDV
RYVIHYHLPGNIQNYMQEIGRAGRDGKPSLAILLYEPNDRYLQANLIDNTYPEDNLISYL
YQHPQVMKKNDAFRVVKYYYENHFSSDQAISFLNRSKEQRLTGLQQMYQYIFTPGCRRKV
LLNHFDEQLVDDDHENQFCCDFHFNFWTKWEIFNDHYLKSSDFRQQNAVKDWHEVLKSLF
LSKN
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatttacaggatgaactaactaaatattttggctttaagcggtttcgtcccggc
caggaaaaaattttgacgatgttgctaaagggcaaaaacgtcctggcaattttacctacg
ggcggtggaaaaacacttttatatcaactgtatgctgctataacacatcaacggattatc
attgtatcgccacttatttcactcatgcaggatcaagtcagtcgtttacaatttctgggt
tctaaacgcgtcattgccctgacttccgcaatcgattttaaagaacgtcaatttattatg
aatcaccttgagcaatatcaatttatttatgcttctccggaaatgctggccaatccacaa
atcatggaaaaattcaaacaactatccgttgggctgctggttattgacgaagcccactgt
atttctgaatggggccccgattttcgcccagattatctaaaattaaatcaggttagaaag
tcactcaaaatgccattaaccttgatgatgactgccaccgctacaaccaaaaccaggcaa
gatatcctcgagcgcatggagatggatcaggatcaggttaatcaaattgttctttccgtt
aatcgtaaaaacatttttttaagcgctcgagtttgtaaaaatcaacgtgaaaaagatgat
cttttagtcaaattggttagtaaacttcacggcgcaggtattatctatttttccagccgt
gcaacagctgaaacagttgcagcgttactgaatcatgacaccagtaaaagggtagaggct
tatcatggcggaatggtgggacaatacaggtttcgaattcaacagcaatttatgaacaac
gagattgatattgtgtgcgctaccagcgcatttggaatgggaattgataaaaatgacgtt
cgttatgtgattcattatcatttaccaggtaatattcaaaattatatgcaggaaatcggt
cgtgccggaagggatgggaaaccatctttagctattctattatatgaaccaaacgatcgt
tatcttcaggcaaacttaattgataatacgtatcccgaagataatttgatcagttattta
taccaacatccacaagtaatgaaaaaaaacgatgcgtttcgtgtcgttaaatattattat
gagaaccatttttcaagcgaccaggctatttcctttctgaatcgttcaaaagaacaaaga
ctgaccggtctacaacagatgtatcaatatatttttacacctggatgtcgacgaaaagtt
ttattaaaccactttgatgaacaattagtcgatgacgatcacgaaaatcagttttgttgt
gactttcattttaatttttggactaaatgggaaattttcaatgaccactacctgaaatcg
agtgattttagacagcagaatgctgtgaaagactggcatgaagtccttaaaagcttattt
ttatcaaaaaattaa
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