Lentilactobacillus hilgardii: G8J22_01860
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Entry
G8J22_01860 CDS
T06851
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lhil
Lentilactobacillus hilgardii
Pathway
lhil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G8J22_01860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhil03400
]
G8J22_01860 (mfd)
Enzymes [BR:
lhil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8J22_01860 (mfd)
DNA repair and recombination proteins [BR:
lhil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G8J22_01860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_22
UB2H
CdvA
Motif
Other DBs
NCBI-ProteinID:
QIR09867
LinkDB
All DBs
Position
complement(1850405..1853938)
Genome browser
AA seq
1177 aa
AA seq
DB search
MQFDQLLTKMPQFTQIASSLKADSRQLITGISGSARTLLIDNLLKTTTRPVVVVVDTLFH
ADQLVSDFSNLLEDDQIFEFPVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSV
SGLKRLLPSPDQFSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILD
VFPLNNQDPVRIDFFDTEVDSMRLFDVSNQRSIKTINTIQILPATDLLITDQQRQKVAGE
LKDQLASEKAKLDDESAKKINNAIEPQIMDLENGLNDPKWLLFANLFYDQSNSLLDYLSD
DGVVVFDDYSRITDSQRQLESDDDVWLTDKIKNHELLPSTNYTNDFKKIFKVNKKATLIL
SLFQKGLGRMRLDAIVDITVRPMQQFFSQMPMLRTEIGRWQKQKQSVIIMVQDQNRMQKV
AQTLSDFEIAATQTDMSAILLHQVQLVHGNLENGFELPIAGLVVITEKEMFGTIVKKRPR
QTTFNNAERIKSYTDLKPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYLTISYRDSAKLFI
PVTQLNMIQKYVSSEDKKPRINKLGGSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGY
AYPPDDSLQNEFEARFPYTETPDQLRSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRA
AFKAVEVGKQVAFLVPTTILAQQHYETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKK
GTVDVVVGTHRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPR
TLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVAD
IEKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVN
TLFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGS
GFKIAMRDLSIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVAFKTDATVEL
DLEAYLPSDYIQDSQQKIEIYKRIRQIENQDQLNEVTDDLIDRFGDYNEPVANLLKISEM
KMYADKAMIEKVHQDGPRVTLTFAKQASEEFTSKELLAAIAQTKFRATINSADNKYQVVL
TVQPNMKDWLDQIIALSKSLTITRKKHQANKVTSNDK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgcaattcgatcaattacttactaaaatgcctcagtttacccagattgcatcaagtctc
aaggctgatagtcgacagttgattacaggcattagcggttcagctcggacactcttgatt
gataatctgcttaagacaacgacgcgaccggtggttgtggttgttgatacgttatttcat
gcagatcaactggttagtgacttttctaacttgctggaagatgatcaaatctttgaattt
ccggttgaagaaatgggagcagccgaacttgcaacaagttctccggaatataaggcacaa
cgggttctcgcactgaataagctgatcagtggcgaaccagcagttatcgtaacgtctgtt
tccggattaaagcgattgctgccgtcgcctgatcaattttcagatgccgagctaacaatt
gatatggattcggaatatgatttggaaaagttaaagctgaagctacaccaaatgggctac
acgtttcagaagttggtggctgcaccgggagatttttcaattcgtgggtcaattttggac
gtatttcccttaaataaccaggatccggtacgaattgatttctttgacactgaagttgat
tccatgcgactctttgatgtttcaaatcaacgtagcataaaaacaattaataccatccag
atacttcctgcaactgatttactgatcaccgatcagcaaaggcaaaaggtcgctggtgag
ttaaaagaccaattagcatctgaaaaagcaaagttggatgatgagtctgccaaaaaaatc
aataatgctattgagcctcaaattatggatcttgaaaatgggttaaatgatcctaaatgg
ttattgttcgctaatttattttatgatcagtcaaactcgctgctggattacttgtcagat
gacggtgttgtggtttttgacgactattcgcgaataacggattctcaacgccaactggaa
agtgatgacgatgtttggctgaccgataaaattaaaaatcatgaattattgccatcgacg
aattataccaatgattttaaaaagatttttaaagtaaacaaaaaggcaacgcttattctc
tcactttttcaaaagggcctcgggagaatgcggttagatgcaattgttgatattaccgtg
cgaccgatgcagcaattcttttcacaaatgccgatgcttcgaactgagattgggagatgg
cagaagcaaaaacagtctgttattattatggttcaggatcaaaatcgaatgcaaaaagtg
gcgcaaacactttctgattttgaaattgcagctacacaaaccgacatgtcggctattttg
ttacaccaggttcaactggttcacggcaatttagagaatgggtttgaactcccgattgcg
ggattggttgtgattaccgaaaaggaaatgtttggaacgattgttaaaaaacgtccacga
caaacaaccttcaataatgcagaacggattaaaagttacactgatttaaagcctggcgat
tacgttgtccacgtcaaccatggtattggccgttatgaaggcatgaaaacgatggaggtt
gatggcaagcatcaggactacctgacaatttcttatcgggacagtgccaagctttttatc
cctgtcactcagttgaatatgattcaaaaatacgtttcttctgaagataagaagccgagg
attaataaacttggtggtagtgaatggcagaaaacgaaacgtaaggttgcatcaaagatc
gaagatatcgctgacgatctgattgaattgtatgcaaaacgggatgcagaaaagggctac
gcttatccacctgacgattccttacaaaatgaatttgaagcacgttttccatatacggaa
acgccggatcaattgcggagtgccgatgaaatcaagcatgatatggagcacaataaacca
atggacagattgttggtcggcgatgttggatatggtaaaaccgaagtggctttgcgagca
gcttttaaggcagtcgaggttggtaaacaggttgcctttcttgtaccaacaactattttg
gcacagcagcattatgaaacgatgcttgagagatttagtgattatccaatcgaagtgagg
gttctttccagatttcaaacgactgctcaaattaaggaaaccctggaaggcttgaaaaaa
gggactgttgatgtggtagtcggaactcatcggcttttgtcaaaggatgttaaattcagt
aaccttggtttactgattattgacgaagaacaacgatttggtgttaagcataaagagcga
atcaaggaaatgcgtacggatgttgatgtattgacgttgacggctacgccaattccacgg
acgttgaatatgtcgatgatgggtgttcgagatttgtctgtgattgagacaccaccttcg
aatcgataccctattcaaacctatgtgattgaacaaaatgccgggaccatccgtgaagcg
attgaacgggaaatggctcgtggcggccaggtgttttatttgcataatcgggtagcggat
attgaaaaaacggtttctcaattaagtgaattggtcccagatgcgaggattgcgtacatt
catggacaaatgactgaaaaccaaatggaagatattttatatgattttgtcaatggtgaa
tacgatgtcctggtgacaaccactattattgaaacgggagtcgatattcccaatgtgaat
acattgtttgtagagaatgccgatcatatgggcctttcccaactttatcaattaagagga
cgaattggccgaagcagccgggtagcgtatgcctattttatgtatcagccaaataaggtt
ttaaccgaaattggtgagaaacgtttggaagccattcgtgattttactgagttgggatcc
ggttttaaaattgcaatgcgggatctttcaattcgaggtgccgggaatcttttaggtaaa
cagcagtcgggctttgtggattcggtagggtatgatttgtatacgcaaatgttatccgat
gccgtttcaaaaaagcgtggcaagaacgtagcctttaaaacggatgccacagtcgaactt
gatcttgaggcttatttgccaagtgattatattcaggatagtcaacagaaaattgaaatt
tataaaagaatccgtcaaattgaaaatcaagatcagctaaacgaagtaacggatgatctg
attgatcgttttggcgattataatgagccggttgctaatttgttaaaaatttccgaaatg
aaaatgtacgctgataaagcaatgattgaaaaagttcatcaggacgggccgagggtaaca
cttacgtttgctaaacaggcaagtgaagaatttaccagtaaggaattgttggctgcaatt
gcgcagaccaaatttcgagcaaccattaatagtgcggacaataagtatcaagttgtgttg
actgttcagcccaatatgaaagattggttggaccaaattattgcattaagtaaatcattg
acgattacaagaaagaagcatcaggccaataaggtaacctcaaatgacaaataa
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