Lentilactobacillus hilgardii: G8J22_01868
Help
Entry
G8J22_01868 CDS
T06851
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhil
Lentilactobacillus hilgardii
Pathway
lhil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G8J22_01868 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhil03019
]
G8J22_01868 (cshA)
03009 Ribosome biogenesis [BR:
lhil03009
]
G8J22_01868 (cshA)
Enzymes [BR:
lhil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G8J22_01868 (cshA)
Messenger RNA biogenesis [BR:
lhil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G8J22_01868 (cshA)
Ribosome biogenesis [BR:
lhil03009
]
Prokaryotic type
rRNA helicases
G8J22_01868 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Terminase_6N
AF0941-like
Motif
Other DBs
NCBI-ProteinID:
QIR09875
LinkDB
All DBs
Position
complement(1859445..1860953)
Genome browser
AA seq
502 aa
AA seq
DB search
MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL
QHLDFNNPNVQALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKSHP
QIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLF
SATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPE
VTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAA
RGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEIEKLTKV
RMLPLKPPTEQEAFVGQLNNAESDIGELIKRTNTEKYEKMADKLLDEYEATDLVAALLND
VTRDYVKVKITPERPLSRRHHGSGGRRNSNNHRGGGHWNNRRNDDRNSSRNRNRRSNGGN
RDRKRKDDRHSNSKHRFTIKNK
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggactatcggacagcttactttcagcaatctcaagcagtggt
tttgaagaagccacaccaattcaagctgagaccattccaatggttcttaatggagaagac
gttattggccaggcacaaactggtactggtaagacagcggcatttgcattgccgatctta
cagcatttggattttaataatccaaacgttcaggcattgatcatttcaccaactcgtgaa
ttagcaattcagacccaagaagaagtttatcgacttggcaaagacgaaaaagctaaggtt
caagttgtatatggtggtgctgatattcgtcggcagatcaattctctgaagagtcaccca
cagattattgtcgggacgccgggaagaatcttggatcatatcagtcgacacacattgaag
ttggagcacgttaagacattggttcttgacgaagccgatgaaatgttaaacatggggttc
cttgatgatattgagtctattatcaagcaaacacctagtgatcgtcagacccttcttttc
tcagcaacgatgcctccacaaattaaacgtgttggcgtgcagtttatgaaggatccccat
caagtaaaaatcaaggccaaagagttgaccacagacttaatcgatcagtattatgttcgg
gttaaggaatatgagaagtttgatacgatgacacgattctttgacgtacaggatccagaa
gtaacgattgttttctgtcggacaaagcgtcgggttgatgaagtttcaaagggactcgaa
gcacgaggctataatgctgcaggcctccacggcgacttaacacaggcacgcagaactcaa
attatgaatgagttcaaacaaggtaaagttgatattctggttgcaaccgatgttgctgcc
cgtggaattgatatttccggtgtgactcatgtttataattatgatattccgcaggatcct
gatggatatgttcaccgggttggtcgtaccggtcgtgccggaaaacatggtgtttcaatt
acatttacaacacctaatgaaatggattatctgcacgaaatcgaaaagttgaccaaagtg
cggatgctgcctttgaaacctcctacagaacaagaagcttttgtaggccaattgaataat
gctgaatctgatattggagagttaattaaacgaaccaatactgaaaagtatgaaaaaatg
gctgataagcttttagacgagtatgaagcaactgatttggttgctgctttgcttaacgat
gtgactcgtgattacgttaaagttaaaattacaccggaacgtccattatctcgaagacat
catggtagtggcggccgtcgtaacagcaataatcatcgtggtggtggtcattggaataat
agacgtaacgatgatcgtaattcctcacgaaatcggaatcgccgtagtaatggtggtaac
cgtgaccgtaagagaaaagatgatcgtcattcgaacagtaaacatcgatttacgatcaaa
aacaaataa
DBGET
integrated database retrieval system
