Laribacter hongkongensis: LHK_00090
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Entry
LHK_00090 CDS
T00884
Name
(GenBank) Probable ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lhk
Laribacter hongkongensis
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lhk03016
]
LHK_00090
Enzymes [BR:
lhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LHK_00090
Transfer RNA biogenesis [BR:
lhk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LHK_00090
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ACO73086
UniProt:
C1D9X3
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All DBs
Position
complement(87275..89128)
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AA seq
617 aa
AA seq
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MATNVFYEESGSFKVGAIMSETDASLQVEAPHGKRSKIKSATVLLRFNSALADFMPAVEA
LAADLDLDFLWECCGEDEFDAAGLAADYFGQTPSAIETAAISLRLHEAPMYFYKKGRGRY
KAAPEESLKAALAGQEKKRLQQLQIDAWVEECRAGRLPEAWRPHLMSLLWKPDKNTLEWK
GLEAACKALALSPLKLVAERGGIGSVPDYLLAGFIMEHFPRGRGFPALDLPVAPAELPAA
SVEAFSIDDSATTEIDDALSLTRLANGNWQVGVHIAAPTLDAPRDGGLEQLVFQRLSTVY
FPGDKITMLPDEVVGVFSLNEGQYCPAVSVYFEVTPEFEIISHESRVERVNIAANLRHDW
LETVFNEETLASDTGRDYPYKAELTTLWQFANALEVRRGKADTNATVRLDYNFAIVDGKV
VLTTRRRGAPMDKLVSELMILANSTWGGDLAAAGIPAMYRAQTAGKVRMTTAAEPHVGLG
VAQYAWATSPLRRAADFVNQQQIVAMIRGETPRYKRGDADLFARLRDFDQAYNAYADFQY
QMERFWCLRWFTQENVSDVTALWVKDDLVRIDGLPLAVRVAGLPEMQPGERVRLQVARID
ELALEIEFRVLGKAETA
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaatgtattttatgaagaaagcggcagcttcaaggtaggggcgatcatgagc
gagactgatgccagtcttcaagtcgaggccccgcacggcaagcgctccaagatcaaatcg
gccacggtgctgctgcgctttaattcggcgctggccgacttcatgccggcggtcgaagcg
ctggcagccgaccttgacctcgacttcctgtgggagtgctgcggcgaggacgaattcgac
gccgccggcctggcggccgactacttcggccagacgccgtcggccatcgaaaccgctgcc
atcagcctgcgcctgcacgaagcgccgatgtacttctacaagaagggccggggccgttac
aaggccgcgccggaagaatcgctgaaagcggcgctggccggacaggaaaaaaagcgcctg
caacagttgcagatcgatgcctgggtggaagaatgccgcgccggccggctgccggaagcg
tggcgcccgcacctgatgtcgctcctgtggaaaccggacaagaacacgctggaatggaaa
gggctggaagctgcctgcaaggcgctggcgctgtcgccgctcaagctggtggccgaacgc
ggcggcatcggttcggtaccggactacctgctggccggcttcatcatggaacacttcccg
cgcggacgcggcttcccggcgctcgacctgccggtggcaccggccgagctgccggcggcc
agcgtcgaggccttctcgatcgacgactcggccaccaccgagatcgacgatgcactgtcg
ctgacccggctcgccaacggcaactggcaggtgggcgtgcacattgccgcgccgacgctg
gacgcgccgcgtgacggcgggctggagcagctggtgttccagcgcctttccaccgtgtat
ttccccggcgacaagatcaccatgctgcccgacgaggtggtgggggtgttttcgctcaac
gaggggcagtactgcccggcggtgagcgtgtatttcgaggtgacgccggaattcgagatc
atcagccacgaaagccgggtcgagcgggtcaacattgccgccaacctgcgccacgactgg
ctggaaaccgtgttcaacgaagaaacgctggccagcgacaccggccgcgattatccgtac
aaggccgagctgaccaccctgtggcagtttgccaatgcgctggaagtgcgccgcggcaag
gccgataccaatgccaccgtgcggctggactacaactttgccatcgtcgacggcaaggtc
gtgctgaccacccggcggcgcggggcgccgatggacaagctggtgagcgagctgatgatc
ctcgccaactcgacctggggcggtgacctggccgccgccggcattccggccatgtaccgc
gcccagaccgccggcaaggtgcgcatgaccaccgccgccgaaccgcacgtcggccttggc
gtggcgcagtatgcttgggctacctcgccgctgcgccgggccgccgacttcgtgaaccag
cagcagatcgtggcgatgatccggggcgaaacgccgcgctacaagcgcggggacgccgac
ctctttgcccgtctgcgcgacttcgaccaggcctacaacgcctatgccgacttccagtac
cagatggaacgcttctggtgcctgcgctggtttacccaggaaaacgtcagcgacgtgacc
gcgctgtgggtcaaggacgacctggtgcgcatcgacggcctgccgctggcagtacgcgtg
gccggcctgccggagatgcagcccggcgagcgggtgcgcctgcaggtggcgcgcatcgac
gaactggcgctggaaatcgagttccgcgtgctgggcaaggccgaaacggcctaa
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